Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4428 ATGAACGACGCAACCGATTCATCTGGATTCTTTGGTTCACATTACATAAGTATTGGAATTTCAATTGGGATTCTTTTACTCATCACAACAATCACACTCACATTCTACATTTGCACAAGATCAATAAATGATTTGGGATTAGATGAAGAAACAATTATGAGCTATTCAAGGATGTTATATTCTGAAGTGAAGCTTAAGAAAAATGATTCAACATCAACATGTTGTTCTATATGTTTAGGTGATTATAAAGGAAGTGATATGCTTAAGGTTTTACCAGATTGTGAACATTTGTTTCATCTTAAGTGTATTGAAACTTGGTTAAGGATGCATCCTACTTGTCCTCTTTGTAGAACTTCTCTAATTCCAACACCTTTGGCTGAAGTTGTTCCATTAGCAACAAGAAGAGATTCATCATATATAGATAGGAAAGCTAACTATGATGTTGAGGTTAAAGGAGTTCAAATAACTCCTGATCCAATTGCAAGAGGCCACCCTGCAACATTCACCATTTCTGCAACTACAAGTCAAGCCTTATCAGAAGGGAAACTCTCGATTGATGTTTCGTATTTTGGTTGGCATGTATATAGTGAGACCCATGACCTTTGTGGAGAATCATCTTGCCCTATTTCGGTTGGTGATTTTGTGATTGCTCATTCACAACTTTTACCTGGTTTCACCCCACCTGGTTCATACTCTTTGAAGATGAAGCTGTTTGATGGAAACAAGAATGAGTTGACTTGCATTACATTTGGTTTTGATATTGGGTTTGGTGACCCTGTGGCTGATAGTTAA 792 0.3649 MNDATDSSGFFGSHYISIGISIGILLLITTITLTFYICTRSINDLGLDEETIMSYSRMLYSEVKLKKNDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIETWLRMHPTCPLCRTSLIPTPLAEVVPLATRRDSSYIDRKANYDVEVKGVQITPDPIARGHPATFTISATTSQALSEGKLSIDVSYFGWHVYSETHDLCGESSCPISVGDFVIAHSQLLPGFTPPGSYSLKMKLFDGNKNELTCITFGFDIGFGDPVADS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4428 263 Gene3D - 138 255 - -
Tpr1g4428 263 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Tpr1g4428 263 PANTHER BNAC03G73370D PROTEIN 133 258 - -
Tpr1g4428 263 SUPERFAMILY RING/U-box 53 123 - -
Tpr1g4428 263 Pfam Ring finger domain 75 117 IPR001841 -
Tpr1g4428 263 Pfam ML domain 144 252 IPR003172 -
Tpr1g4428 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 122 IPR013083 -
Tpr1g4428 263 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 133 258 IPR039670 -
Tpr1g4428 263 SMART pgtp_13 139 252 IPR003172 -
Tpr1g4428 263 CDD RING-H2_PA-TM-RING 74 117 - -
Tpr1g4428 263 SUPERFAMILY E set domains 145 254 IPR014756 -
Tpr1g4428 263 SMART ring_2 75 116 IPR001841 -
Tpr1g4428 263 CDD PG-PI_TP 138 252 IPR033917 GO:0032366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4428 Tpr-Chr1 51938162 51944768 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4428 11 134 C3H Transcription Factor Family AT5G06490 42.775 2.50e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4428 - - gmx:100306050 224.942