Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4426 ATGAATAACACAGCTGATTCATCTGGATTCTTTGGTTCCAATAACATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGTATTCTTTTACTCATCACAACAATCACACTCACATCATATTTTTGTACAAGATCACAAGTACCAAATCCTCATAGAAGAAGAAACAATAATATTAATACCCCTCATGAATTTCTAGAGCCACAACATTCAATAATTGATTTGGGATTAGATGAAGAAACAATTATGAGTTATCCTAAGATGTTATATTCAGAAGTGAAGCTTAAGAAAAATGATTCAACATCAACATGTTGTTCTATATGTTTAGGTGATTATAAAGGGAGTGATATGCTTAAGGTTTTACCAGATTGTGAACATTTGTTTCATCTTAAGTGTATTGAACCTTGGTTAAGGATGCATCCTACTTGTCCTCTTTGTAGAACTTCTCCAATTCCAACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTAGCAACAAGAAGAGATTAA 513 0.3294 MNNTADSSGFFGSNNISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNPHRRRNNNINTPHEFLEPQHSIIDLGLDEETIMSYPKMLYSEVKLKKNDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIEPWLRMHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4426 170 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Tpr1g4426 170 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 168 - -
Tpr1g4426 170 SUPERFAMILY RING/U-box 81 152 - -
Tpr1g4426 170 CDD RING-H2_PA-TM-RING 104 147 - -
Tpr1g4426 170 Pfam Ring finger domain 105 147 IPR001841 -
Tpr1g4426 170 SMART ring_2 105 146 IPR001841 -
Tpr1g4426 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 168 IPR045899 -
Tpr1g4426 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4426 Tpr-Chr1 51925926 51927016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4426 6 167 C3H Transcription Factor Family AT2G35910 59.877 9.45e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4426 - - gmx:121172638 232.261