Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4422 ATGGCTATGCAACCTGTTTACCTTAGAGAACATGAAGGTGTTGGACAATATTCTTCTGTGAATTCAGCTCCATGGTGGAGTAATGCCTTTGGATCACAATCTGTTTATGGAGGAGAGTCTTGTGGTCAAATGAAACCATTTTCATTGGAACTTTCCAACTACATAGATCAACTTGCTCCTACTAAGCACTTGGCAAGAGGTGTTGAACAATTGTTTGATAAAGGACATCATACAACTAATCAATTTACCATCTTTCCAGATGACTGTAAGATGTCTCTTGATGCACAAACTCATCAGGCAACCTTATCACTGCAATCATCATTTTCTGCTGAGCCGCATAATCGTTTCGAGCTAGGGTTTAACCAACCTATGATATGTGCTAAATATCCATATATGGATCAGTTTTATGGGCTGTTCTCGACTTACGGACCTCAAATTTCGGGACGTATCATGCTTCCGCTTAGCATGACATCTGATGATGGACCGACTTATGTGAATGCTAAGCAGTACCATGGAATCATCAGGCGCCGGCAATCTCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGAAACAAGCCATATATGCACGAATCTCGTCATCTACATGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAATTTCTACTGATGGAAATGGAAAAACCGGGAGTGAGATGAAGAAAAAAACCGGGGGCGGCCTACAACTGCAGTCCAGTGCTTCACAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTGAATTCGTTGAAAGAGACAAATGGAGGCAGTCCAAATGTCTCGGGTTCGGAGGTGACTAGTATGTATTCACAGGGAGGTCTTGATAGCTTTGCTGTCAATCATATCAGATCTTCTGTCCACTCATTGGGAGACATGGTCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAACAGCTGTCACTGGCAGACAGCTGTTGCAACCTTAA 999 0.4354 MAMQPVYLREHEGVGQYSSVNSAPWWSNAFGSQSVYGGESCGQMKPFSLELSNYIDQLAPTKHLARGVEQLFDKGHHTTNQFTIFPDDCKMSLDAQTHQATLSLQSSFSAEPHNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKISTDGNGKTGSEMKKKTGGGLQLQSSASQSSEVLQSEVGTLNSLKETNGGSPNVSGSEVTSMYSQGGLDSFAVNHIRSSVHSLGDMVDTGHGIVMPTKWFATAVTGRQLLQP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4422 332 MobiDBLite consensus disorder prediction 238 278 - -
Tpr1g4422 332 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Tpr1g4422 332 Gene3D - 159 220 - -
Tpr1g4422 332 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Tpr1g4422 332 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Tpr1g4422 332 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Tpr1g4422 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 330 IPR001289 GO:0003700|GO:0006355
Tpr1g4422 332 MobiDBLite consensus disorder prediction 223 278 - -
Tpr1g4422 332 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 330 - -
Tpr1g4422 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4422 Tpr-Chr1 51863967 51868257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4422 1 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.133 1.00e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tpr1g4422 CBFB_NFYA 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4422 K08064 - gmx:100808195 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0658 6 5370678 5374680 Tpr1g4422 1 51863967 51868257 PCT