Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4421 ATGGCTGCTGGTACTACCATTGCTTCCTTCTCCATGTACACAAAATTCGTTAACTTTTCCTTTTCTTCTTCTTCTTCTTCCATTCCACTCAACTTCCCACACACAAAAACCATTTCCCCAAAACCCCTCAACCTAAAACCCCAATTATTCAACAACCCTTTTCCTTTCTCACTCTACTCTCTTCATTGTCTTCCTCCAATTACCTTCCATGATTTCCTACTCACTCATAAAATAATAGAAGAATCTGAAGACGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGAAGACGAAGAGCAACCTAGGAGACTCTTTGTTGGAAACTTGCCATTTTCATTGTCTTCTTTCCAATTGGCTGAACTCTTTGGAGAAGCTGGGACTGTTGTGTCTGTGGAGGTTGTGTATGATGACATGACGAATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGCGGAGGATGCTGAAGAAGCAATTCAAATGTTTGATGGCACTGAAGTTGGAGGTAGGGCTATTAAGGTAAACTTCCCAAAAGTGCCCAAAGCAAGTGAAAGGGTACAAACGGGCTCAATCTATAGAGGTTATGTAGACAGCCCACACAAAATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATTTATGAAAGGAACAGTGGAAAGTCTCGCGGATTTGGATTTGTCTCTTTCGAAACTTCTGAAGATGTAGAGGGTGCTTTGAGTAATATGAACGGTGTGGAGGTTCATGGCCGGCCTTTACGACTGAATTTGGTTGTAGATAGTAAGAAGCCTTCATCTCCTCCGGCAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTGTTTGGAATAAGTAAATGA 948 0.4146 MAAGTTIASFSMYTKFVNFSFSSSSSSIPLNFPHTKTISPKPLNLKPQLFNNPFPFSLYSLHCLPPITFHDFLLTHKIIEESEDDDDEEEEEEEEEEEEEDDEDEEQPRRLFVGNLPFSLSSFQLAELFGEAGTVVSVEVVYDDMTNRSRGFAFVTMGSAEDAEEAIQMFDGTEVGGRAIKVNFPKVPKASERVQTGSIYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQPGLLSAKVIYERNSGKSRGFGFVSFETSEDVEGALSNMNGVEVHGRPLRLNLVVDSKKPSSPPAIDQNKGNNVDSLEMLFGISK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4421 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Tpr1g4421 315 SUPERFAMILY RNA-binding domain, RBD 102 195 IPR035979 GO:0003676
Tpr1g4421 315 Gene3D - 193 296 IPR012677 -
Tpr1g4421 315 SUPERFAMILY RNA-binding domain, RBD 205 292 IPR035979 GO:0003676
Tpr1g4421 315 CDD RRM_HP0827_like 110 186 - -
Tpr1g4421 315 Coils Coil 78 107 - -
Tpr1g4421 315 PANTHER OS02G0815200 PROTEIN 3 295 - -
Tpr1g4421 315 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 295 - -
Tpr1g4421 315 MobiDBLite consensus disorder prediction 81 106 - -
Tpr1g4421 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Tpr1g4421 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Tpr1g4421 315 Gene3D - 76 192 IPR012677 -
Tpr1g4421 315 SMART rrm1_1 209 282 IPR000504 GO:0003723
Tpr1g4421 315 SMART rrm1_1 110 183 IPR000504 GO:0003723
Tpr1g4421 315 MobiDBLite consensus disorder prediction 81 109 - -
Tpr1g4421 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4421 Tpr-Chr1 51856105 51859086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4421 105 306 Eukaryotic Initiation Factors Gene Family AT2G36660 30.986 4.45e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4421 - - aprc:113861916 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4421 1 51856105 51859086 Tpr1g4421 1 51856105 51859086 ECH