Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4417 ATGAACAATTTATTCACCGGTTCATTTTCTCGCTTCCATAGCGAAGAAGTCTCACCGGATCGCCACCATGTGATTGAGATGACAGACGGTGGCGGAGCCACCGGAGGTAGAGTAAACCTGGACAAATTTTTCGACGACGTAGAAGGTGTAAAAGACGATCTAAAAGAGCTTGAAGTAATTTCACATAGACTCGAAAAGAGTCATGAACAGAGCAAAACGGTTCACGATGCTAAGGGAGTTAAGGAATTGCGTTCTCGTATGGACGACGAAGTTTCGGTGGCTTTGAAAAAAGCGAAGATGGTGAAACTGAAATTGGAAGCGTTGGAACGATCTAATGCTGCGAACCGGAATTTGCCAGGGTGTGGACCGGGTTCGTCTTCGGACCGGACGAGAAGTTCTGTGGTCAACGGTTTGAAAAAGAAGCTTAAGGATTCTATGGAGACTTTTAACCGTCTCCGTGAACTTATTTCTTCGGAGTATAGAGAGACTGTTCAACGCCGTTATTTTACCGTTACCGGCGAGAATCCTGATGATAAGACGCTTGATCTGTTGATTTCCACTGGCGAGAGTGAGACCTTTCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTATTGACACAATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTACTGGCGTTGCACCAAGTGTTCCTTGACATGACAGTATTGGTACAACTTCAAGGTGAGCAGTTGGATGATATTGAGAGCCACGTGGCAAGGGCGAGCTCGTTTGTGCAAACTGGAACTGAGCAGTTACAGACTGCAAGGAAGCACCAGAAAAACACAAGGAAATGGACCTGTTATTGTATTATACTACTTCTGATCATCGTCTTGTTTGTGGTTCTCTTCACTGTGAAACCGTGGCAACATAGTGGTGGCGGTGGGGGTAATCAGCCTGCTCCAGCGCAAACAAACCCTTCTCCTCCCCCTCCTCCAACTCCTACTTAA 999 0.4605 MNNLFTGSFSRFHSEEVSPDRHHVIEMTDGGGATGGRVNLDKFFDDVEGVKDDLKELEVISHRLEKSHEQSKTVHDAKGVKELRSRMDDEVSVALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRSSVVNGLKKKLKDSMETFNRLRELISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRIIDTINEIQERHDAVKELEKSLLALHQVFLDMTVLVQLQGEQLDDIESHVARASSFVQTGTEQLQTARKHQKNTRKWTCYCIILLLIIVLFVVLFTVKPWQHSGGGGGNQPAPAQTNPSPPPPPTPT* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4417 332 SMART tSNARE_6 205 272 IPR000727 -
Tpr1g4417 332 Gene3D - 38 170 - -
Tpr1g4417 332 MobiDBLite consensus disorder prediction 118 133 - -
Tpr1g4417 332 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr1g4417 332 PANTHER SYNTAXIN 7 310 IPR045242 -
Tpr1g4417 332 MobiDBLite consensus disorder prediction 309 332 - -
Tpr1g4417 332 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Tpr1g4417 332 Gene3D - 205 303 - -
Tpr1g4417 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Tpr1g4417 332 CDD SynN 40 197 IPR006011 GO:0016020
Tpr1g4417 332 Pfam SNARE domain 246 298 IPR000727 -
Tpr1g4417 332 MobiDBLite consensus disorder prediction 114 133 - -
Tpr1g4417 332 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 310 - -
Tpr1g4417 332 SMART SynN_4 35 161 IPR006011 GO:0016020
Tpr1g4417 332 CDD SNARE_syntaxin1-like 209 271 - -
Tpr1g4417 332 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4417 Tpr-Chr1 51830634 51833523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4417 27 331 SNARE and Associated Proteins AT3G11820 71.429 2.36e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4417 K08486 - gmx:100809258 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0661 6 5388633 5391022 Tpr1g4417 1 51830634 51833523 PCT