Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4414 ATGGCGAATCTCCCCCCTCAATCACCCTCTATGAAGAAAGATAAATCGAATTCCAGTTCCTCCAGCATTAATTCCACCAGGATGATGTACGCAAAACGTCTTGTAATTGAACTGAACAATCCCGATCTACGAGAAAATGCTCTTACTGTGCTTTCCAAGATGACAGATTTATTTCAAGAACTCGCGTCAGTATTGTGGAATTCTTTTGGTATTATTGCAACATTTTTACAGGAAATAACTTCAATATATCCTGTAATTTCAACTCCAGATCTTACTCCACAACAATCAGCTCGAGTATGCAATGTTCTTGCCCTACTTCAGTGTGTGGCATCCCACTATGATACAAAGATATCATTTCTGAAAGCTAACATGCCTATATATTTGTATCCCTATCTTCGCACAACAAACAATTCGGCACCATATGAGGATTTGAGACTTGCTAGTCTTGGAGTCATTGCTGCAACCGTGAAGGTTAAGACCAGAGAAGCCATAGATTTCCTTCTGGCAAGTGAAGTCATGCCGCTGTGCCTCCAAAGTATTGATGTTGGCAGAGAACTGTCAAAAACTGTAGCAACTTTTATTGTTGAGAAAATTCTGTCAGATCACGTTGGTATGGCTTATGTTTGTGTTATACCAGAACGCTATCATGCAGTAATCGGAGCTTTGGACATGTTGGCAAAAGCTCAGAATCAACCTTCATCGAGGCTTGTGAAGCTGTTGGTTTCGTGTTATACTTATCTCTCGGAAAAACAAGTAATGTTTTTGCCGAAAACAATTCCACCACCATCTTAA 792 0.4003 MANLPPQSPSMKKDKSNSSSSSINSTRMMYAKRLVIELNNPDLRENALTVLSKMTDLFQELASVLWNSFGIIATFLQEITSIYPVISTPDLTPQQSARVCNVLALLQCVASHYDTKISFLKANMPIYLYPYLRTTNNSAPYEDLRLASLGVIAATVKVKTREAIDFLLASEVMPLCLQSIDVGRELSKTVATFIVEKILSDHVGMAYVCVIPERYHAVIGALDMLAKAQNQPSSRLVKLLVSCYTYLSEKQVMFLPKTIPPPS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4414 263 Pfam Cell differentiation family, Rcd1-like 34 251 - -
Tpr1g4414 263 PANTHER UNCHARACTERIZED 6 251 - -
Tpr1g4414 263 SUPERFAMILY ARM repeat 39 199 IPR016024 -
Tpr1g4414 263 MobiDBLite consensus disorder prediction 1 23 - -
Tpr1g4414 263 Gene3D - 23 259 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4414 Tpr-Chr1 51785552 51790165 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Tpr1g4414 Rcd1 2e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4414 K12606 - sind:105174887 274.248