Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4408 ATGGCTTTGACTGTTGATAATCGTAATATGTTTTCAAACATTGATGAAATCAACTCTGATAGGGCAACTTGGAATTTTCAGGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAGTTAATGTTCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAATTTAAACATGAGTTAATCGAGGGAAAAGTTTATTCTTTTGAAAATCTTGGTGTGGCAGCTAATACTGGAGCTTATAGGACAACACATCATCCCTACAAACTGAACTTTCAGTTTGGCTCATTGGTTCAGAGGCTGTCCAACTGTGATATTTTGAAGTCTCCATTTACCTTTGTTCCGATTGCTGATATTTTGGGGGGTTGTTATGACACTGATTTTTTACTTGATGTTATTGGTTTCTTGACTGAGATTGGGCAAGAACGTGAGATCACTAATCAGAATGGTAGTACAACGAAGCTGAATGTCATTGCATTGGAAGCTGATGGGCATAAGCTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTTAATACCTTTGTTGGAGCTGGTGATCTAACCAATGCTGTGGTTATTGTTCAGCTTGCTAAGGCTAAGATCTTCCAAGACAAGATACATATCCAGAATTGCATGAATTGTTCTGTTTTGATATTTAACCCAACTTGTGACGAAAGTGTAGCCTTAAGGGCAAGTCTCAATGGTTCTGATGAGAATCCGTCTCCATTGACCTTTACTCAAGTTAGCACAGAGTCAAGTGTTCAACCACTTGATGAGTTTCTGCACATTACTCCAAGGATTACCTTGCAAGGTCTCAAGGATGCTACAACTGAATCATCACATGTTGTTGCTGCAACTGTTAAGAGGACTTTAAATCCCAATAGTTATTGGTATACATCATGTTTGTGCGGCAAGGCTGTTGTGCCGGATTCAAAGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTTCAAAGGTTGTTCCTAGGTTTTGTGTCAAAGTCAGAGTCATGGATGATACTGATTCTGCCATTTTTGTGATCTTTGACAAGGAAGCAAGTTCCATATTCAATATGTCTTGTGCTGATATGGTTCGAAATGGAGAAAATGATGTTGGTGAAAGAATTGTTCCACCTGAAATTGATGAGACACTGATTGATCAAACTTGGCTTTTTAAAGTTGAAGCTAAACCTTTTCAGAATCCTAGGTTTGAGCAATCTTTCCGTGTAAGAAAGATTTGTACCGATGAGGGTATAATTAAGCAATTTAAGGACAAGTGGGATAATGAGGATGCTGTGTATCTTAAAAATACAAATGAGGGTGGATCTTTGAGTACTTTGCTGGCAAAGGGGAAAGATGATTATGTAGTTGGGTCGTCAAACGTCCTTTCTGAGGAGTTTGAAAACTTTAGTGGAGATTCTGACAAGTCAAAAGGTTTGATTGTTGAGCGGTCAACTGTTGACGTATCACAAGATTTGATGATGAAATTTTCATCAGCTGTTGTTAATCTTGGCGATGATTTTGATAATACTCCTCTTTGTATTAAGCCAAATACATCCTCTAAGGTGAAACATATTTCATCTGCTGCTGTTGTCAACCCGAATACCGTTGTTGATGGTGTGAAGCCAATTCAACCTGATGATAATGCAAAGCCAATCAACTCTGCTGGATCTGTGAATCGAATCAACTCTGCTGGAGCTGCGAAGTCTCAACAATCTGCTGCTGTTGTTGATGATTTGAGCCAGACAGCTTCAGCCTCTGTTAGGCCATCTGGACAGCGAAAGAAAATTGTTCCTAAGAGAGTGTCCCCTCAACATGAAGATCGAGATGTTGAAGATGAAAATGCTCCTATCAAGTTGTTGAAAAGGGCGGTGAAGATTGAGAAGATTTAA 1938 0.3854 MALTVDNRNMFSNIDEINSDRATWNFQAKVIRLWQVNDFNRVNVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHELIEGKVYSFENLGVAANTGAYRTTHHPYKLNFQFGSLVQRLSNCDILKSPFTFVPIADILGGCYDTDFLLDVIGFLTEIGQEREITNQNGSTTKLNVIALEADGHKLQCTLFGPYVDELNTFVGAGDLTNAVVIVQLAKAKIFQDKIHIQNCMNCSVLIFNPTCDESVALRASLNGSDENPSPLTFTQVSTESSVQPLDEFLHITPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEKCNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMSCADMVRNGENDVGERIVPPEIDETLIDQTWLFKVEAKPFQNPRFEQSFRVRKICTDEGIIKQFKDKWDNEDAVYLKNTNEGGSLSTLLAKGKDDYVVGSSNVLSEEFENFSGDSDKSKGLIVERSTVDVSQDLMMKFSSAVVNLGDDFDNTPLCIKPNTSSKVKHISSAAVVNPNTVVDGVKPIQPDDNAKPINSAGSVNRINSAGAAKSQQSAAVVDDLSQTASASVRPSGQRKKIVPKRVSPQHEDRDVEDENAPIKLLKRAVKIEKI* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4408 645 CDD RPA1_DBD_A_like 27 113 - -
Tpr1g4408 645 Pfam Replication factor-A C terminal domain 300 412 IPR013955 -
Tpr1g4408 645 Gene3D - 9 115 IPR012340 -
Tpr1g4408 645 Gene3D - 268 431 IPR012340 -
Tpr1g4408 645 SUPERFAMILY Nucleic acid-binding proteins 11 117 IPR012340 -
Tpr1g4408 645 CDD RPA1_DBD_C 288 412 IPR013955 -
Tpr1g4408 645 MobiDBLite consensus disorder prediction 590 605 - -
Tpr1g4408 645 Pfam Domain of unknown function DUF223 49 142 IPR003871 -
Tpr1g4408 645 MobiDBLite consensus disorder prediction 590 629 - -
Tpr1g4408 645 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Tpr1g4408 645 CDD RPA1_DBD_B_like 146 237 - -
Tpr1g4408 645 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 383 - -
Tpr1g4408 645 PANTHER REPLICATION FACTOR A 1, RFA1 28 383 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g4408 645 Gene3D - 119 257 IPR012340 -
Tpr1g4408 645 SUPERFAMILY Nucleic acid-binding proteins 281 413 IPR012340 -
Tpr1g4408 645 MobiDBLite consensus disorder prediction 615 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4408 Tpr-Chr1 51671013 51674208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4408 14 376 Core DNA Replication Machinery Family AT2G06510 22.310 5.00e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4408 - - mtr:MTR_4g036240 592.808