Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4404 ATGGATCAAGAGATTGAAGTTTCACCATTTTTCCTATGCCCAATTTCATTACAACTCATGAAGGATCCAGTTACTGTCGCAACAGGCATAACCTACGACAGACAAAGCATCGAAAAATGGCTTTTTTCATCACAAAACCAAACATGTCCTGTCACTAAACAGCAACTCACACATGATGAGAATGATCTTGTTATTCTGACACCAAATCACACTCTTCGCAGACTCATTCAAGCATGGTGCATCATTAATACTTCTCATGGTGTGGAAAGAATTCCAACTCCAAAAGCACCAACAACTAAATCCCTTATAGAGAAACATCTTAAAGATGCGTCTGGTTCTTCAGATTCACCTCATTTACTTATCCAATCCCTCAAAAACCTCAAAACAATTGCTTCCGAAAGCGAAACAAACCGAAGGTGTATTGAATCGGCTGGCGCTGTTGAGTTCTTAGCATCAATAGTAACAAAAAACAATACAAGTTCTTCATCTTCATGTTCAAGTTCAACAACAGAATTTGAAGTTGAATCTACCATTCTTGATGATGATGATATTGAAGGGTTTCCTTTTGACTTCAGAGTAGATGCAGAAGATGAAGCTATAAACATTCTTTACAATCTTCATTTAACAGAACAAGGTTTGATAACTCTTCTAAACTTTAAAAATGGAGAATTTTTAGAGTCTTTATTGAGATTACTGCAAAAGGCTAACTATGATTCAAGAACATATTCAGTTTATCTCTTGAAATCTATGTCAAAAGTTGCTGATCCAACAAAACTTGTGAATCTAAAGACCGAGTTTTTCGTTGAATTAGTTCAGCTTCTGAAAGACCAGATATCAAAAAAGGCATCAAAAGCAACACTACAAACACTTATTCAACTCGTTGAATTCGGGAGAAATAGAATAAAAGCAATTGAATCAGGGTGTGTTAATGTTTTGATAGAAATTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTACTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAGCTATTAAACCATGGTTGTGGTTTAGCTATTATTTCAAAGAAGATTTTGAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGGTGAGAATTGGTGTTGTTGCTAAGCTCTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGACAAAGCAAGAGAGATACTTAAATTGCATGCCAAGTCTTGGAAGAATTCTCATTGCATACCTTCTAATTTACTTGCTTCATACCCAACAAGTGCCTGA 1335 0.3573 MDQEIEVSPFFLCPISLQLMKDPVTVATGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDENDLVILTPNHTLRRLIQAWCIINTSHGVERIPTPKAPTTKSLIEKHLKDASGSSDSPHLLIQSLKNLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSSSSCSSSTTEFEVESTILDDDDIEGFPFDFRVDAEDEAINILYNLHLTEQGLITLLNFKNGEFLESLLRLLQKANYDSRTYSVYLLKSMSKVADPTKLVNLKTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRIKAIESGCVNVLIEILLDCKERKPCEMILVLLEKLCQCADGRYELLNHGCGLAIISKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMVRIGVVAKLCLVLEVDSGNKAKDKAREILKLHAKSWKNSHCIPSNLLASYPTSA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4404 444 Gene3D - 99 430 IPR011989 -
Tpr1g4404 444 SUPERFAMILY ARM repeat 76 426 IPR016024 -
Tpr1g4404 444 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Tpr1g4404 444 SUPERFAMILY RING/U-box 5 86 - -
Tpr1g4404 444 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tpr1g4404 444 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Tpr1g4404 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 441 - -
Tpr1g4404 444 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Tpr1g4404 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Tpr1g4404 444 PANTHER WDSAM1 PROTEIN 3 441 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4404 Tpr-Chr1 51628181 51629804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4404 1 441 U-box Gene Family AT3G52450 51.345 5.74e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4404 - - gmx:100809123 559.681