Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4403 ATGATATTGGTACTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAGCTATTAAACCATGGTTGTGGTTTAGCAATTGTTTCAAAGAAGATTCTGAGAGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGGTGAGAATTGGTGTTGTTGCTAAGCTCTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGAAAAAGCAAAAGAGATACTTAAATTGCATGCAAAGTCTTGGAGGAATTCTCATTGCATTCCTTTTAATTTACTTGCTTCATACCCAACAAGTTAA 354 0.3531 MILVLLEKLCQCADGRYELLNHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMVRIGVVAKLCLVLEVDSGNKAKEKAKEILKLHAKSWRNSHCIPFNLLASYPTS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4403 117 PANTHER WDSAM1 PROTEIN 1 115 IPR045185 GO:0061630
Tpr1g4403 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4403 Tpr-Chr1 51623730 51624228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4403 1 115 U-box Gene Family AT3G52450 65.217 4.20e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4403 - - gmx:100809123 182.185