Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4402 ATGGATCAAGAGATTGAAGTTTCACCATTTTTCCTATGCCCCATTTCATTACAACTCATGAAGGATCCAGTTACTGTCTCAACCGGCATAACCTACGACAGACAAAGTATCGAAAAATGGCTCTTTTCATCACAAAACCAAACATGTCCTGTCACTAAACAACAACTCACACATGATGACAATGATCTCATTATTCTGACACCAAATCACACTCTTCGCAGACTCATTCAAGCATGGTGTACCATTAACACTTCTTATGGAATCCAAAGAATCCCAACTCCAAAACCACCAACAACAAAATCCCTTATTGAGAAACATCTTAAAGATGCTTCTGATTCTTCAGATTCACCTCATTTGCTTATTCAATCCCTCAAAAACCTCAAAACAATAGCTTCCGAAAGCGAGACAAATCGAAGGTGTATCGAATCAGCTGGCGCAGTAGAGTTCTTAGCATCAATAGTAACAAAAAACAATACAAGTTCTTCATCTTCATGTTCAAGTTCAACAACAGAATTTGAAGTTGAATCTACCATTCTTGATGATGATGATATTGAAGGGTTTCCTTTTGACTTCAGAGTAGATGCAGAAGATGAAGCTATAAACATTCTTTACAATCTTCATTTAACAGAACAAGGTTTGATAACTCTTCTAAACTTTAAAAATGGAGAATTTTTAGAGTCTTTATTGAGATTACTGCAAAAGGCTAACTATGATTCAAGAACATATTCAGTTTATCTCTTGAAATCTATGTCAAAAGTTGCTGATCCAACAAAACTCGTGAATCTAAAGACCGAGTTTTTCGTTGAATTAGTTCAGCTTCTCAAAGACCAGATATCAACAAAGGCATCAAAAGCAACACTACAAACATTGATTCAACTCGTCGAATTCGGAAGAAATAGAATAAAAGCAATTGAATCAGGGTGTGTTAATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTACTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAGCTATTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTATTTCAAGATTCTCAGCTACACATTTTGTTGTTCAAGAAATGGTGAGAATTGGTGTTGTTGCTAAGCTCTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGAAAAAGCAAGAGAGATACTTAAATTGCATGCAAAGTCTTGGAGGAATTCTCATTGCATTCCTTTTAATTTACTTGCTTCATACCCAACAAGTTAA 1332 0.3559 MDQEIEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDDNDLIILTPNHTLRRLIQAWCTINTSYGIQRIPTPKPPTTKSLIEKHLKDASDSSDSPHLLIQSLKNLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSSSSCSSSTTEFEVESTILDDDDIEGFPFDFRVDAEDEAINILYNLHLTEQGLITLLNFKNGEFLESLLRLLQKANYDSRTYSVYLLKSMSKVADPTKLVNLKTEFFVELVQLLKDQISTKASKATLQTLIQLVEFGRNRIKAIESGCVNVLIELLLDCKERKPCEMILVLLEKLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSISRFSATHFVVQEMVRIGVVAKLCLVLEVDSGNKAKEKAREILKLHAKSWRNSHCIPFNLLASYPTS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4402 443 SUPERFAMILY ARM repeat 107 427 IPR016024 -
Tpr1g4402 443 Gene3D - 95 430 IPR011989 -
Tpr1g4402 443 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Tpr1g4402 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Tpr1g4402 443 SUPERFAMILY RING/U-box 5 85 - -
Tpr1g4402 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 441 - -
Tpr1g4402 443 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tpr1g4402 443 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Tpr1g4402 443 Pfam U-box domain 8 81 IPR003613 GO:0004842|GO:0016567
Tpr1g4402 443 PANTHER WDSAM1 PROTEIN 3 441 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4402 Tpr-Chr1 51607926 51609667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4402 1 441 U-box Gene Family AT3G52450 52.466 2.85e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4402 - - gmx:100809123 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4402 1 51607926 51609667 Tpr1g4402 1 51607926 51609667 ECH
Tpr1g4402 1 51607926 51609667 Tpr6g0663 6 5420671 5422172 PCT