Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4400 ATGGAACAAGAGAACGAAGTTTCACCATTTTTTCTATGCCCAATTTCATTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGATAGACAAAGCATCGAAAAATGGCTCTTTTCATCTCAAAACCAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGAGAATGATCTCATTATTCTGACACCAAATCACACTCTTCGCAGACTCATTCAAGCATGGTGCACCATCAACACTTCTTATGGAATCCAAAGAATTCCAACTCCAAAAGCACCAACAACAAAATCCCTTATTGAGAAACATCTTAAAGATGCTTCTGATTTTTCAGATTCACCTCATTTGCTTATTCAATCCCTCAAAAACCTCAAAACAATAGCTTCCGAAAGCGAGACAAATCGAAGGTGTATCGAATCAGCTGGCGCAGTAGAGTTCTTAGCATCAATAGTAACAAAAAACAATACAAGTTCTTCATCTTCATGTCCAAGTTCAACAACAGAATTTGAAGTTGAATCTACCATTCTTGATGATGATGATGGTTTTTCTTTTGACTTCAGAGTAGATGCAGAAGATGAAGCTGTAAATATTCTTTACAATCTTCATTTAACAGAACAAGGTTTGATAACTCTCTTAAACTTTAAAAATGGGGAATTTTTAGAGTCTTTAATGAGATTACTGCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTAAAATCTATCTCAAAAGTTGCTGATCCAACAAAACTAGCGAATCTAAAGACCGAGTTTTTCGTTGAATTAGTTCAGCTTCTGAAAGATCAGATATCAAAAAAGGCATCAAAAGCAACACTACAAACACTGATTCAAGTCGTCGAGTTCGGGAGAAATAGAGTAAAAGCAATTGAATCAGGGTGTGTTAATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTCCTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAGCTATTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTATTTCAAGATTCTCAGCTACACATTTTGTTGTTCAAGAAATGGTGAGAATTGGTGTTGTTGCTAAGCTCTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGAAAAAGCAAGAGAGATACTTAAATTGCATGCAAAGTCTTGGAGGAATTCTCATTGCATTCCTTTTAATTTACTTGCTTCATACCCAACAAGTTAA 1329 0.3567 MEQENEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDDENDLIILTPNHTLRRLIQAWCTINTSYGIQRIPTPKAPTTKSLIEKHLKDASDFSDSPHLLIQSLKNLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSSSSCPSSTTEFEVESTILDDDDGFSFDFRVDAEDEAVNILYNLHLTEQGLITLLNFKNGEFLESLMRLLQKGNYDSRTYSVFLLKSISKVADPTKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQVVEFGRNRVKAIESGCVNVLIELLLDCKERKPCEMILVLLEKLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSISRFSATHFVVQEMVRIGVVAKLCLVLEVDSGNKAKEKAREILKLHAKSWRNSHCIPFNLLASYPTS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4400 442 SMART Ubox_2 10 80 IPR003613 GO:0004842|GO:0016567
Tpr1g4400 442 SUPERFAMILY RING/U-box 6 86 - -
Tpr1g4400 442 Gene3D - 96 428 IPR011989 -
Tpr1g4400 442 SUPERFAMILY ARM repeat 108 426 IPR016024 -
Tpr1g4400 442 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tpr1g4400 442 Pfam U-box domain 8 82 IPR003613 GO:0004842|GO:0016567
Tpr1g4400 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 440 - -
Tpr1g4400 442 PANTHER WDSAM1 PROTEIN 4 440 IPR045185 GO:0061630
Tpr1g4400 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Tpr1g4400 442 ProSiteProfiles U-box domain profile. 6 87 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4400 Tpr-Chr1 51596129 51597837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4400 1 440 U-box Gene Family AT3G52450 51.786 3.99e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4400 - - gmx:100809123 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4400 1 51596129 51597837 Tpr1g4400 1 51596129 51597837 ECH