Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4399 ATGGAACAAGAGAACGAAGTTTCACCATTTTTTCTATGCCCAATTTCATTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGATAGACAAAGCATCGAAAAATGGCTCTTTTCATCTCAAAACCAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGATAATGATCTCATTATTCTGACACCAAATCACACTCTTCGCAGACTCATTCAAGCATGGTGCACCATCAACACTTCTTATGGAATCCAAAGAATTCCAACTCCAAAAGCACCAACAACAAAATCCCTTATTGAGAAACATCTTAAAGATGCTTCTGATTTTTCAGATTCACCTCATTTGCTTCTTCAATCTCTCAAAAAGCTCAAAACAATCGCGTCCGAAAGCGAGACAAATCGAAGGTGTATTGAATCGGCCGGGGCAGTTGAGTTCTTAGCATCAATAGTAACAAAAAACAATACAAGTTCTACCATTCTTGATGATTATGATGTTGAAGGTTTTGCTTTTGACTTCAGAGTTGATGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTAATTTAACAGAACAAGGTTTGAAAACTCTTTTAAACTTCAAAAATGGAGAATTTTTAGAGTCTTTATTGAGATTACTGCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTATGTCAAAAGTTGCCGATCCAACAAAACTAGCGAATCTAAAGACCGAGTTTTTCGTCGAATTAGTTCAGCTTCTGAAAGACCAGATATCAAAAAAGGCATCAAAAGCAACAATACAAACATTGATTCAACTCGTCGAATTCGGAAGAAATAGAATAAAAGCAATTGAATCAGGGTGTGTTAATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTACTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAGCTATTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTATTTCAAGATTCTCAGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTGTTGTTGCTAAGCTCTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGAAAAAGCAAGAGAGATACTTAAATTGCATGCAAAGTCTTGGAGGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCTTACCCAACAAGTTAA 1290 0.3558 MEQENEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDDDNDLIILTPNHTLRRLIQAWCTINTSYGIQRIPTPKAPTTKSLIEKHLKDASDFSDSPHLLLQSLKKLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSTILDDYDVEGFAFDFRVDAEDEAINILYNLNLTEQGLKTLLNFKNGEFLESLLRLLQKGNYDSRTYSVFLLKSMSKVADPTKLANLKTEFFVELVQLLKDQISKKASKATIQTLIQLVEFGRNRIKAIESGCVNVLIELLLDCKERKPCEMILVLLEKLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSISRFSATHFVVQEMLRIGVVAKLCLVLEVDSGNKAKEKAREILKLHAKSWRNSHCIPFNLLASYPTS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4399 429 SMART Ubox_2 10 80 IPR003613 GO:0004842|GO:0016567
Tpr1g4399 429 PANTHER WDSAM1 PROTEIN 4 427 IPR045185 GO:0061630
Tpr1g4399 429 SUPERFAMILY ARM repeat 109 413 IPR016024 -
Tpr1g4399 429 SUPERFAMILY RING/U-box 6 86 - -
Tpr1g4399 429 ProSiteProfiles U-box domain profile. 6 87 IPR003613 GO:0004842|GO:0016567
Tpr1g4399 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Tpr1g4399 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 427 - -
Tpr1g4399 429 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tpr1g4399 429 Gene3D - 91 417 IPR011989 -
Tpr1g4399 429 Pfam U-box domain 8 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4399 Tpr-Chr1 51590238 51591828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4399 1 427 U-box Gene Family AT3G52450 52.027 8.97e-155 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4399 - - gmx:100809123 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0663 6 5420671 5422172 Tpr1g4399 1 51590238 51591828 PCT