Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4397 ATGGCAACTTATTTTCATAATAATTCAGAAATTCAAGGTGGTTCTGCTGATGGCCTACAAACACTCATATTCATGAACCCATCAGGCTACATCAATTACTCCGACACGCCGCAACCGCCGCCACATGCCGGAAACCTTGTATTTCTAAATTCAGCAGCCACACTAGCCGGCAACGGCAACACCTCAATCCAACAACAACATAATCTATCTCACGCGCCACCACAATTTGTTGGGGTCCCGCTCTCGGCAGAACAATCAGTACAAGCTCATCACGACATCTCCGCCTTGCATGGGTTCCCACCGCGCATGCAGTACAATTTGTGGAACGCTGCTGACCCAAATTCGGCGGCGCGTGAGGCTACACGCGCTACACAGGGGCTGTCTTTAAGCTTACACGCACAAGGTTCGGGCGAGGATGCACGAGTTTCGGCTGGTGGGTCGTGTTCCTCTGCTTCAAACAACGGTGTTTCAGGGATTCAGAGTGTGTTGTTAAGTTCTAAGTATTTGAAAGCTACACAAGAATTACTTGATGAGGTTGTTAATGTTAATGGTGGAATTAAGGTTGAAAGTGTTAAGAAAAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCTGTTAGTGGTGATGGTGGTTCTGTTGGTGGTGATGGAAGTGGAAAACGTAGCTCTGAATTATCAACTACAGAGAGACAAGAAGTTCAGATGAAGAAGGCAAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGGTACAGACAATATCACAACCAGATGCAAATGGTGATATCCTCATTTGAACAAGTTGCAGGAATTGGCTCAGCAAGAACTTACACTGCACTTGCATTACAAACAATTTCAAAGCAATTTAGGTGTTTAAAAGATGCTATTACTGGCCAAATTAGAGCTGCAAATAAAAGCTTAGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGACTTAAATATGTTGATCATCATTTAAGGCAACAAAGAGCTATTCAACAATTGGGAATGATGCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCTGAAAGATCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTCCTTCATCCTTATCCAAAGGATTCAGACAAACACATGCTGGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGACTTTGGAAGCCAATGGTGGAAGAAATGTACACGGAAGAGATGAAGGAGCAAGAGATGAATGGTTCTGAGGATAACAAATCAAGCAAGCATATTGATGAAGACACTTCAATGAAATCAACAACTCCACAACAAGTTCCAACCTCAGAAACAGAATCGAAAAGTTTCAATTCGAAACAAGACATTCCTATAGTTTCAGTTTCAACACAATCAACTTCACCAATTGGTGTGAATGTTAGAAACAATAATTCCGGATTCAGCTTCACAGAACTTGATGGAATAACACAAGCAAGTCCAAAGAGAACAAGGAACCATGAAATCCTTCAATCACCAAATCATGTGAAATCAAATGAGACAAATAATAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAATCAAACTAATTTCATCGCCGGTTTCGGTCAATATCCGATGGAAGAAATCGGTAGATTTGATGCTGAACAATTCACACCAAGGTTTTCAGGTAACAACAATGGTGTTTCACTCACTCTTGGTTTACCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATTCAACTAGGAAGAAGATTGGACATTAGTGAACAAAATGAGTTTGGTGATTCTTCAGCTGCATTTGAGAGTATGAACATGCAGAATCCAAAAAGATTTGCTGCACAATTATTGCCAGATTTTGTGGCCTAA 1953 0.405 MATYFHNNSEIQGGSADGLQTLIFMNPSGYINYSDTPQPPPHAGNLVFLNSAATLAGNGNTSIQQQHNLSHAPPQFVGVPLSAEQSVQAHHDISALHGFPPRMQYNLWNAADPNSAAREATRATQGLSLSLHAQGSGEDARVSAGGSCSSASNNGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVESVKKSFEKNKVVGESSTAVSGDGGSVGGDGSGKRSSELSTTERQEVQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKEQEMNGSEDNKSSKHIDEDTSMKSTTPQQVPTSETESKSFNSKQDIPIVSVSTQSTSPIGVNVRNNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNETNNNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFTPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDISEQNEFGDSSAAFESMNMQNPKRFAAQLLPDFVA* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4397 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 609 - -
Tpr1g4397 650 MobiDBLite consensus disorder prediction 441 464 - -
Tpr1g4397 650 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 8 609 - -
Tpr1g4397 650 SUPERFAMILY Homeodomain-like 349 415 IPR009057 -
Tpr1g4397 650 SMART prehox3 157 300 IPR006563 -
Tpr1g4397 650 Pfam Associated with HOX 162 299 IPR006563 -
Tpr1g4397 650 Gene3D - 351 430 - -
Tpr1g4397 650 MobiDBLite consensus disorder prediction 418 464 - -
Tpr1g4397 650 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Tpr1g4397 650 MobiDBLite consensus disorder prediction 418 440 - -
Tpr1g4397 650 SMART HOX_1 348 412 IPR001356 GO:0003677
Tpr1g4397 650 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Tpr1g4397 650 MobiDBLite consensus disorder prediction 203 233 - -
Tpr1g4397 650 CDD homeodomain 348 409 IPR001356 GO:0003677
Tpr1g4397 650 Coils Coil 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4397 Tpr-Chr1 51498719 51504045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4397 1 650 Homeobox Transcription Factor Family AT2G35940 51.934 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr1g4397 POX 2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4397 - - gmx:100810851 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0665 6 5438315 5445070 Tpr1g4397 1 51498719 51504045 PCT