Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4396 ATGGATGAAATTGAAGTTCCACAATATTTCATATGTCCAATCTCTCTTCAAATAATGAAAGATCCTGTTACTGCTATAACAGGTATAACATATGATAGAGAAAGCATTGAACATTGGTTATTCAGAAACAAGAACACAACATGTCCTGTTACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCATACACTTCGTCGTTTGATTCAATCTTGGTGTACACAAAATGCTTCATTTGGTATTGATAGAATTCCAACACCAAAACCACCACTTAACAAAACCCATGTTCAAAAACTTCTTAAAGAGATGACAGATTCAAGATTTCAGCTCAAGAGTTTAATGCAGTTGGAATTACTTGCTGCTGAGAATGAAAGAAATAGAAAGTGTTTGTTGGAAAACGGTGTGCCGAAATCGATGATTATGTTCTTAGTTGATTGTTATAAAAAAGGTGAAATTCTTGAAGGTATTGAAGAAGCTCTTAGTTTTTTACAATTTGTTAAGGTTCCAACTGAGGAAGTTAAGAATCTTTTATCTGAAAATGATCAAATATTAGATTCTTTAACATGGATTTTATCTTCAGAAGTAAAAAACTCTGTTGCAGTGAAATCTCATGCAGTTATAGTTCTTAAAAGATTCATAAACAAATGTGATTCCATTCTTTTAGAGAGACTAAAACCCGAGTTTTTCGAAAAGATTGTGAATGTTTTAAAACATGGAGTATTAACACAACAAGGTTTGTGTTCTGCTTTACATGTTTTACTATGTTGTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGTCGGCGTTGTTCACGAATTAATAGAGATCGAATTAACCGCGGCACACGAAAAGAGAATCACAGAACTAACATTTGGGATTTTGTTTCATTTGTGTTCTTGTGCTAATGGTAGATTTCAGTTTTTGAGTCATGAAGGTTCAATTGCAGTGTTAACTGAAAGAATCATGAAGGGTTCAATGACAGTGGATGATAGAGGTGTTTTTATACTTTCATTGATATCTAAATTTTCAGCTACAAAGAATGTTTTGGATGAGATGTTAAAAGTTGGAACTGTTAAAAAGCTTTTTGTTTTGTTACAAGGTGATCATGCTAAGTATTTGAAAGATAAAGTTATGCAAATGTTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTCAAACTTCTTTCTATGCTAGCTAG 1221 0.3284 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEHWLFRNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASFGIDRIPTPKPPLNKTHVQKLLKEMTDSRFQLKSLMQLELLAAENERNRKCLLENGVPKSMIMFLVDCYKKGEILEGIEEALSFLQFVKVPTEEVKNLLSENDQILDSLTWILSSEVKNSVAVKSHAVIVLKRFINKCDSILLERLKPEFFEKIVNVLKHGVLTQQGLCSALHVLLCCCPLGRNRLMMVEVGVVHELIEIELTAAHEKRITELTFGILFHLCSCANGRFQFLSHEGSIAVLTERIMKGSMTVDDRGVFILSLISKFSATKNVLDEMLKVGTVKKLFVLLQGDHAKYLKDKVMQMFKAHSEVWKNSPCFPQTSFYAS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4396 406 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Tpr1g4396 406 Gene3D - 96 391 IPR011989 -
Tpr1g4396 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 403 - -
Tpr1g4396 406 SUPERFAMILY ARM repeat 99 375 IPR016024 -
Tpr1g4396 406 SUPERFAMILY RING/U-box 3 83 - -
Tpr1g4396 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Tpr1g4396 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Tpr1g4396 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Tpr1g4396 406 Coils Coil 115 135 - -
Tpr1g4396 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Tpr1g4396 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4396 Tpr-Chr1 51460456 51462194 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4396 2 401 U-box Gene Family AT3G11840 41.176 1.88e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4396 - - gmx:100798446 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4396 1 51460456 51462194 Tpr1g4396 1 51460456 51462194 ECH