Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4387 ATGGCGACAGTTGCTGCTGCAGCAGATGTCTCTGCGGCTGTTTCAACTGTTGCTGCAAATGTCTCTGTAGCTGTATTGGCTACTTTTTCAACTACAAACAACAACACACTTCACTATGATCTTTCCATCAAAATCGCGATAAGAAATCCTAATCGAAGAGTTGGTATCTACTACAATAACATCGAAATGCTTGCATTTTATAAGGATGTTAAGTTTGGTTCTCAAACTTTTGGAAAATTCTTTCAGAGTCATAAGAATACAAGTTTCTTGAATGCAGTTTTTAGAGGTCAGAAAGTGATTCCTTTAAGTTCTGATCAGATTTTGGAACTGGATAAAGAGACGAAAAACGGAGTTTATGCAATTGTTGTTAAGATTTTGCTTAAAGCAAGGTTTACACTTGGTTTGTTCAAGACATGGGAAGGGAATCCTATGGTTCGTTGTGATTTGCAGGTTCCTTTGAAATCCGGCAATGAATTTCTAGCCACTAATTGTGATTGGGATGACAAATGGTGGTTATTCCGTTAG 525 0.3752 MATVAAAADVSAAVSTVAANVSVAVLATFSTTNNNTLHYDLSIKIAIRNPNRRVGIYYNNIEMLAFYKDVKFGSQTFGKFFQSHKNTSFLNAVFRGQKVIPLSSDQILELDKETKNGVYAIVVKILLKARFTLGLFKTWEGNPMVRCDLQVPLKSGNEFLATNCDWDDKWWLFR* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4387 174 PANTHER OS05G0367900 PROTEIN 19 166 IPR044839 GO:0098542
Tpr1g4387 174 Pfam Late embryogenesis abundant protein 44 140 IPR004864 -
Tpr1g4387 174 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 19 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4387 Tpr-Chr1 51236312 51236964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4387 24 157 SNARE and Associated Proteins AT1G32270 34.328 1.52e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4387 - - aprc:113873272 175.637