Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4381 ATGTCAATGTCCGGTGCCGCTGGAGCTTCCGACCGTGGCTCGTCGAGGGAGGTTACCGGAGCACCAATTCGGCCGCCGTTGAAGCGTCATCTGGCTTTTGTCTCGACGAGGCCACCGTTTGCACCTACGGATGAGTATCATAGTTTCGCCGCCGTCGATTCTAGGAAAGTTCCCGATCATGTTACTGAAGCCGTCATTGTTAGATCTCCGCTCATAAAGCGGAAGAATGGAATGAATGAAAGCCAAGGAGAATCACAAAAGTCGAGTAACAGCCCGGGATACACTAATGTAACGAATAGTCCCTTTAAAACTCCTTTGTCTGCAAAAGAGGGAAGGACACATAAGTCAAGGGTTTCCAAAGAAGGCAGATCATGTCCTCAAACACCCATCTCAAACGCTGGTTCCCCTTCTCCGCTTACTCCTGTTGGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGCATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATACGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATATCAAGAACAGAATACTTTGGAAAGGAATTGAATCTTCTACTCCTGGCAATGTGGATGGTGATATCAACATGCTTAAGTCAGAAGTTGAAAAACTTTCTTTGGAAGAGCAGAGACTAGATGATAAAATAAGGGAAATGCAAGAAAAGCTGAGAAGTTTAAGTGAAGATGAAAATAACCAGAAGTTCCTTTTTGTGACCGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCGCATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAAGCCGTTGACTATCTACAGCGGAGATATAGAATCATTCTTAGGAGCACAATGGGTCCCATCGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGCTGCTGTGGCCCCGACGAGCTTAGCTATTGCTTCAAGTTCAGAGTCTACTGAGCAACAAGTGACAGAAATGGTTCCTGCTGAATGCAGTGGAAACGGACTTGATCCTCAAGCTCTCCTCTCTTCTCAGACATACTCTGATTTAAATGTTTCACAAGATCTTGCTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGACGCTGATTATTGGCTTCTATCGGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCAGCTAGTGTTGATTGGAGTGCTGTGGACATGCTTCATCCTGACTTTGAAATGATTGCGAGGCCACAAACTCCATCGCCTGTACTTGCAGAAGCACCATCAACTGTAGCTAACCCTAATCAGAGGTGA 1407 0.4435 MSMSGAAGASDRGSSREVTGAPIRPPLKRHLAFVSTRPPFAPTDEYHSFAAVDSRKVPDHVTEAVIVRSPLIKRKNGMNESQGESQKSSNSPGYTNVTNSPFKTPLSAKEGRTHKSRVSKEGRSCPQTPISNAGSPSPLTPVGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNIKNRILWKGIESSTPGNVDGDINMLKSEVEKLSLEEQRLDDKIREMQEKLRSLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINAAVAPTSLAIASSSESTEQQVTEMVPAECSGNGLDPQALLSSQTYSDLNVSQDLAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSASVDWSAVDMLHPDFEMIARPQTPSPVLAEAPSTVANPNQR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4381 468 SUPERFAMILY "Winged helix" DNA-binding domain 146 209 IPR036390 -
Tpr1g4381 468 Coils Coil 162 182 - -
Tpr1g4381 468 MobiDBLite consensus disorder prediction 72 137 - -
Tpr1g4381 468 MobiDBLite consensus disorder prediction 122 137 - -
Tpr1g4381 468 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Tpr1g4381 468 MobiDBLite consensus disorder prediction 75 106 - -
Tpr1g4381 468 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Tpr1g4381 468 PANTHER TRANSCRIPTION FACTOR E2F 25 454 IPR015633 GO:0000978|GO:0006357
Tpr1g4381 468 PANTHER TRANSCRIPTION FACTOR E2FB 25 454 - -
Tpr1g4381 468 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Tpr1g4381 468 Gene3D - 141 213 IPR036388 -
Tpr1g4381 468 CDD E2F_DD 227 328 IPR032198 GO:0046983
Tpr1g4381 468 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Tpr1g4381 468 Coils Coil 224 261 - -
Tpr1g4381 468 MobiDBLite consensus disorder prediction 1 29 - -
Tpr1g4381 468 Gene3D - 218 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4381 Tpr-Chr1 51103680 51110602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4381 19 462 E2F-DP Transcription Factor Family AT2G36010 55.957 1.93e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tpr1g4381 E2F_CC-MB 1.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4381 K06620 - gmx:100811762 692.575