Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4372 ATGGGTCGTGTGAGAACCAAAACCGTGAAGAAATCTTCACGTCAAGTGATCGAACGTTACTACTCAAGAATGACCTTAGATTTCCACACAAACAAAAAAATCCTGGAAGAAGTTGCACTCATTCCATCGAAGAGACTCCGCAACAAAATTGCTGGGTTTTCAACTCATCTCATGAAGCGAATTCAAAAAGGACCTGTCCGTGGAATTTCATTGAAGTTACAAGAAGAGGAGCGTGAACGTCGCATGGACTTCGTTCCTGATGTTTCTGCCATCAGGACCGACCATATTGCAGTTGATAAGGAAACACTTGACATGCTTTCTGCTCTTGGAATGGCGGAGATTCCCGGTGTCGTGCAAGTCGATCCTGTCCCTGTTAATGTTCAGCAGATTCCATTTGGCCGTGGAGCTGGTGGTGCTGCTGGTGCTGGAAGAAGGTTTTGA 441 0.458 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIAVDKETLDMLSALGMAEIPGVVQVDPVPVNVQQIPFGRGAGGAAGAGRRF* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4372 146 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Tpr1g4372 146 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tpr1g4372 146 PANTHER 40S RIBOSOMAL PROTEIN S17 1 146 - -
Tpr1g4372 146 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Tpr1g4372 146 PANTHER 40S RIBOSOMAL PROTEIN S17 1 146 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tpr1g4372 146 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tpr1g4372 146 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4372 Tpr-Chr1 50946255 50946981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4372 1 146 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 77.397 1.22e-76 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4372 K02962 - cpap:110810532 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4372 1 50946255 50946981 Tpr1g4372 1 50946255 50946981 ECH