Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4370 ATGGATCTTCCAGAGACATCACTATGGTGGACTCAACAACAGCAACAACAACAACATCAACAACAACAAACTATGATATTACTTGAACCAATTCAAAACACTTCTTGGTCTCTCCATCACCACCAACCCACATGGTACAATTCACAAATCCATGAAAACATGACTCCCCATTTCAACCATGTTAACATGGAAGATGAAGAAATACCTAACAACAACAACAGCACTACCATGACCGGTGAAATAAAATCAGAAGACGAAAAAGAACCAATGTTCGAAAAACCACTAACACCTTCAGATGTAGGTAAACTTAACCGTCTTGTTATCCCAAAACAATATGCCGAAAAATACTTTCCACTCGGCGGAGTCAGTGACTCTGCCGAGTGCAAAGGGTTGTTACTGAGCTTCGAAGACGAATCAGGAAAGTGTTGGCGATTTCGTTACTCTTATTGGAATAGTAGTCAAAGCTATGTTTTGACTAAAGGTTGGAGTAGATATGTTAAAGATAAACGTCTTGATGCTGGTGACGTTGTTTTGTTTGAACGACATCGTTTTGATAGTCAGAGACTTTTTATTAACTGGAGGAGGAGGAGGTTGAGTGGGGAGGAACAGTCGGCGGCGTATGTTAGTAGAGCGGTGGTGGGAGGAAATGGGGGTGGGAATAGTAAAAATGAGGTTGTTAGTGGTGTTGGTGTTGGGTGGTCCAGAGGTTTCTATTCTGCGCATGTTCCTTATCCTGCGCATCATCAGGTTTTGCCGTATCAACATGATCACTGTCTTCATGCAGGTAGAGGGTCCCAAAGTCAGAACCAAAGGACAAAACCACTAGGAAATAGTTCAAGTTCAAGTTCTAGTTCAAGGGTACTTAGGTTATTTGGTGTTAACATGGAATGCCAACCAGAACATGATTCTTCCACACCTCAATGTTCTTATGATAGTAATAATATGCCATTAACACAAAGTACTCTAGATAATAATAGCCCTAATCTCTACCAACCTAATTCTTCTCATAATTCAAATCATCACATGCTACGTCACCAACCATATTACTACTAG 1053 0.4065 MDLPETSLWWTQQQQQQQHQQQQTMILLEPIQNTSWSLHHHQPTWYNSQIHENMTPHFNHVNMEDEEIPNNNNSTTMTGEIKSEDEKEPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGVSDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRFDSQRLFINWRRRRLSGEEQSAAYVSRAVVGGNGGGNSKNEVVSGVGVGWSRGFYSAHVPYPAHHQVLPYQHDHCLHAGRGSQSQNQRTKPLGNSSSSSSSSRVLRLFGVNMECQPEHDSSTPQCSYDSNNMPLTQSTLDNNSPNLYQPNSSHNSNHHMLRHQPYYY* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4370 350 SMART B3_2 91 197 IPR003340 GO:0003677
Tpr1g4370 350 MobiDBLite consensus disorder prediction 263 284 - -
Tpr1g4370 350 ProSiteProfiles B3 DNA-binding domain profile. 91 197 IPR003340 GO:0003677
Tpr1g4370 350 Gene3D - 80 207 IPR015300 -
Tpr1g4370 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 314 IPR044800 GO:0003700
Tpr1g4370 350 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 11 314 - -
Tpr1g4370 350 CDD B3_DNA 89 187 IPR003340 GO:0003677
Tpr1g4370 350 Pfam B3 DNA binding domain 91 196 IPR003340 GO:0003677
Tpr1g4370 350 SUPERFAMILY DNA-binding pseudobarrel domain 86 195 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4370 Tpr-Chr1 50902246 50905291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4370 84 298 RAV Transcription Factor Family AT5G06250 53.363 9.09e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g4370 B3 7.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4370 - - cam:101511950 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4370 1 50902246 50905291 Tpr1g4370 1 50902246 50905291 ECH
Tpr6g0702 6 5810996 5813801 Tpr1g4370 1 50902246 50905291 PCT