Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4359 ATGCAGATATTCGTGAAAACCCTAACAGGGAAAACGATAACTCTTGAAGTAGAGAGTAGCGACACAATCGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAGCAACGTTTGATCTTCGCCGGAAAACAGCTTGAAGATGGAAGAACCCTAGCTGATTACAACATTCAGAAAGAATCCACACTGCATCTTGTGCTAAGGCTTCGTGGAGGTATCATAGAGCCTTCTTTGATGGCTTTGGCTCGCAAATACAATCAGGACAAAACCATTTGCCGCAAATGTTATGCTCGTCTGCATCCAAGGGCAGTAAATTGCCGGAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATTAAGTAG 387 0.4367 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4359 128 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tpr1g4359 128 PANTHER UBIQUITIN 1 125 - -
Tpr1g4359 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tpr1g4359 128 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr1g4359 128 Gene3D - 80 128 IPR038587 -
Tpr1g4359 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tpr1g4359 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tpr1g4359 128 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tpr1g4359 128 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Tpr1g4359 128 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 1 125 - -
Tpr1g4359 128 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tpr1g4359 128 CDD Ubl_ubiquitin 1 76 - -
Tpr1g4359 128 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Tpr1g4359 128 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tpr1g4359 128 SUPERFAMILY Zn-binding ribosomal proteins 76 127 IPR011332 GO:0006412
Tpr1g4359 128 Gene3D - 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4359 Tpr-Chr1 50768268 50769839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4359 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.438 8.68e-92 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4359 K02927 - zju:107416326 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4359 1 50768268 50769839 Tpr1g4359 1 50768268 50769839 ECH