Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4356 ATGATGATCAAACTTCGAACACACGCTTCCAGTTTTTACATTTATATTCCATGTTGTAATCAATCATTCGTTCATTCACTCTCACACATTGCTAGCACCATGTCATTTGAACACTATGGGCGTGGCAGTGAAGCCAATGGCATTCACTTCTACCAGACCATTCAACTTCGCCAGTTGCAAGATCAAGAATTAATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTACCAAATCCAATATCCCTTAGACTACCAAATGAGTCTGTGTGCAAAATGTTTTGGGTGCAATGGGGTGATGATATTTATATTCAAGATTGGAAAAGGTTTGCGAGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAGTATAAAGGAGGGTCAGATTTTCATGTTATTATATTAGATGAGAGTAAATTAGAAATTGACTATTCAAGTATGAGGTATAATGATGACCAAGAAGAAGAACAGCGTCAAAATATCGAACAACCCGTCAAGAAAAAGAAAATCAACTCAAATGATAGTGTTGCTACACCTCAAGAGACTCACATTGACAAGAGAAAACTTAAAATGAATGCAACCCAGAGAAAAATTTCAGAAATATATGTTTCAAGTATGAGATGCAACAATGAACAAGATAAAGAGAGTGATGTTGATGACTATGCCGAGATTGCGAATGAGGGTGAAAATACCAAACAACCCTTCAAGAAAAAGAAAATCAACCCAAATGATAGTGCTGGTACACCTCAAGGGACAGGCATTGACAAGAGAAAAATTAATATGAATGCAACCCTGAAGAAAGTCTTAGAGGCTAATAGAAACAGAGGAGGCAGCAAGGATATGAAAGTTAAGAAATGCACAAAAACTATAGATGCGAATAAGATAAGCTGCACTGATTCTCATCCCGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTCATCATATAAGATTGAGGATACCTTTATCATTTTCGAAAGAATACATGAATGAGTTCTTGCAAGGGAATGCAACAATTAGAAGCGTTGGTGACGAAAGGACATGGAACGTGACATTAAAATTGGATGGATGCAATGGAAATTTTGAAATGAGAACAGGTTGGAAGTCATTTTTACAGGAACATAACTTGCAAGTTGGCGATGAATGTAAATTTGAGATGACTCAAAGAAAACCACTTTTATTCACAATTACTATTATCCCAGCTACAAAGGAATCATGCCCGGAGCGGTTTCAAGAAAACCAACCAATCCAAGAAGATATGGATCATGTGGGAAATTATGGAGAAGGAATTTCAAGGGGCAGCTCGAAAACACACGATTCTCCAAGTCCGATTTCACATTATAAATTTGAGGTTTCTGTAACATCATTGGACAAGGTGGCCATACCAAGTGAGTTCTTGAAGAGACACAATATATTTAGTGGAAATTTAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATCAACATCTTGATTACGGGTCGTTCACCAAAGGTTGGGAAGAATTTGTGAGAGAATCCCAGGTAAAGATCGGAGACACTTGTTTGTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 1644 0.371 MMIKLRTHASSFYIYIPCCNQSFVHSLSHIASTMSFEHYGRGSEANGIHFYQTIQLRQLQDQELMIPRNFVERYWKDVPNPISLRLPNESVCKMFWVQWGDDIYIQDWKRFARSLRCGDLLVFQYKGGSDFHVIILDESKLEIDYSSMRYNDDQEEEQRQNIEQPVKKKKINSNDSVATPQETHIDKRKLKMNATQRKISEIYVSSMRCNNEQDKESDVDDYAEIANEGENTKQPFKKKKINPNDSAGTPQGTGIDKRKINMNATLKKVLEANRNRGGSKDMKVKKCTKTIDANKISCTDSHPDENPNFTLKLSRSYVEGHHIRLRIPLSFSKEYMNEFLQGNATIRSVGDERTWNVTLKLDGCNGNFEMRTGWKSFLQEHNLQVGDECKFEMTQRKPLLFTITIIPATKESCPERFQENQPIQEDMDHVGNYGEGISRGSSKTHDSPSPISHYKFEVSVTSLDKVAIPSEFLKRHNIFSGNLVELKVGEGTWFVEVNYNQHLDYGSFTKGWEEFVRESQVKIGDTCLFEMIDVQNHVFKVSIILDV* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4356 547 Gene3D - 287 410 IPR015300 -
Tpr1g4356 547 Gene3D - 441 546 IPR015300 -
Tpr1g4356 547 MobiDBLite consensus disorder prediction 228 253 - -
Tpr1g4356 547 PANTHER B3 DOMAIN-CONTAINING 42 406 - -
Tpr1g4356 547 PANTHER B3 DOMAIN-CONTAINING 464 544 - -
Tpr1g4356 547 SMART B3_2 309 409 IPR003340 GO:0003677
Tpr1g4356 547 SMART B3_2 456 542 IPR003340 GO:0003677
Tpr1g4356 547 SMART B3_2 50 139 IPR003340 GO:0003677
Tpr1g4356 547 CDD B3_DNA 64 137 IPR003340 GO:0003677
Tpr1g4356 547 Gene3D - 43 140 IPR015300 -
Tpr1g4356 547 ProSiteProfiles B3 DNA-binding domain profile. 310 409 IPR003340 GO:0003677
Tpr1g4356 547 SUPERFAMILY DNA-binding pseudobarrel domain 304 407 IPR015300 -
Tpr1g4356 547 MobiDBLite consensus disorder prediction 151 170 - -
Tpr1g4356 547 CDD B3_DNA 459 544 IPR003340 GO:0003677
Tpr1g4356 547 SUPERFAMILY DNA-binding pseudobarrel domain 459 544 IPR015300 -
Tpr1g4356 547 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 464 544 - -
Tpr1g4356 547 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 42 406 - -
Tpr1g4356 547 CDD B3_DNA 307 407 IPR003340 GO:0003677
Tpr1g4356 547 Pfam B3 DNA binding domain 458 542 IPR003340 GO:0003677
Tpr1g4356 547 Pfam B3 DNA binding domain 311 405 IPR003340 GO:0003677
Tpr1g4356 547 MobiDBLite consensus disorder prediction 151 183 - -
Tpr1g4356 547 SUPERFAMILY DNA-binding pseudobarrel domain 48 138 IPR015300 -
Tpr1g4356 547 ProSiteProfiles B3 DNA-binding domain profile. 451 547 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4356 Tpr-Chr1 50708601 50723209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4356 50 404 B3 DNA Binding Superfamily AT3G18990 22.590 3.42e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g4356 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4356 - - mtr:MTR_6g061070 586.26