Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4355 ATGACTAGCAACCGGAAGAATAAGCATACTCTCCCGGCTTCTACTATCCGTTTTTTCAGAATCATCACTTCAACAATTCTTCAAGATGAAAAGCTTAGGATTCCAAACTCTTTCACTAGGAAACATGGGAGTAATATGACAAACCCAATATTTCTCAAGACTCCGGATGGCAAAAAATGGGAAATATACACGACTAAAATTAATGATGGAGATTTTTGGTTTCAAAAAGGTTGGAAGGAATTTGCTACACATTATTCACTAGACCATGGACACATGGTATTGTTTGAGTATGAAGAAAACTCTCAATATTTTAGGGTGCATATATTTGGAAAGAGTGGACTTGAAATTGAATATCCTTTCCATGACAATCAACATGAAGAAAACAGCTTTGATCAAATTAGTGATGATGATTCAATTGAAATTTTGGATAAGTCACCTTCATGCAAGAAAACAAGACCAAAATCACCAATTCCATGTTCTCAACCACATAAGAAATTGAGAAGTGACACAAGAGAAGATGTTGGAACAAGCTCCAAATTCCATGACTTTCCTCAAAATCATGACCAATCTAGTGATGATACAAGTGAAGGTGATGGAAAAAGTTCCAAATTCTATAACATGCCTAAGTATGATCATGTCGAAATTAGTGACAATACCGCGGATGGTAGCGTTAAATGCCAAAAAGTGGAGCAAGAGAAGGAGCAGGAAGAGTTATCGTCTAAAATTAATGAAGCTCTAAATAGAGCTAGAAGCTTCAAATCTAAAAATCCTTGTTTCACAATTGTCATGAAATCTTCGTATCTTTATAGCTATTCCTTGTATGTCCCAACACAATTTGCAATAAATTATTTGAAGAAAGAGGAAAGCAATATTCTTCTTAAGCTCTTGAATGGGAGAACTTGGTATGCTAAATATTGTTTTGGAAAAATTAAATCTGGATGGAAGAATTTTGTAAGAGACAATAAATTGAAAGTGGGTGATGTGTGTGTGTTTGAGTTGACAAAAAGCCAAGCTCTTACTTTGAGAGTACTAATCTTTAGAGTTGATGATGAAGAACCACACTCCTCTTCTCTACCTCAAGTTCAAAGGGACGAAGACATCTCGGAAGTTGAAAGTGAAAATTATATTAGTATCGACGAAGATGAGAAGGAACCACAAAGAACTTCATTGCGGTCAAAAGTCAAATTGGAGACAAATGAAGCTCAAAATGCAGCTGATAATTTCACATCAAAACATCCCTTTTTCAAGATCAATATTATGCCAAATCAACGAGGACATTCTAGATTGCTTGTACCAAATTCCTTCATTAGAGAGTACTTGGATAGTAAGGAGCAGACTGTGATGTTAAAGTTTGGAAAGAAATTTTGGCCAGTAAAGTTATTATGTTACTCAAACATGAAATCAGGGCAGTTTTCTAGAGGTTGGAATGAATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGTATGTGTTTTTGAGCTCATCAAGACTGAAGATGTTGTGCTTCATGTTCATATTTTCAGAGGCAATTGA 1533 0.3516 MTSNRKNKHTLPASTIRFFRIITSTILQDEKLRIPNSFTRKHGSNMTNPIFLKTPDGKKWEIYTTKINDGDFWFQKGWKEFATHYSLDHGHMVLFEYEENSQYFRVHIFGKSGLEIEYPFHDNQHEENSFDQISDDDSIEILDKSPSCKKTRPKSPIPCSQPHKKLRSDTREDVGTSSKFHDFPQNHDQSSDDTSEGDGKSSKFYNMPKYDHVEISDNTADGSVKCQKVEQEKEQEELSSKINEALNRARSFKSKNPCFTIVMKSSYLYSYSLYVPTQFAINYLKKEESNILLKLLNGRTWYAKYCFGKIKSGWKNFVRDNKLKVGDVCVFELTKSQALTLRVLIFRVDDEEPHSSSLPQVQRDEDISEVESENYISIDEDEKEPQRTSLRSKVKLETNEAQNAADNFTSKHPFFKINIMPNQRGHSRLLVPNSFIREYLDSKEQTVMLKFGKKFWPVKLLCYSNMKSGQFSRGWNEFWEENKLKGGDVCVFELIKTEDVVLHVHIFRGN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4355 510 PANTHER B3 DOMAIN-CONTAINING 377 508 - -
Tpr1g4355 510 PANTHER B3 DOMAIN-CONTAINING 13 348 - -
Tpr1g4355 510 SMART B3_2 414 510 IPR003340 GO:0003677
Tpr1g4355 510 SMART B3_2 18 112 IPR003340 GO:0003677
Tpr1g4355 510 SMART B3_2 259 349 IPR003340 GO:0003677
Tpr1g4355 510 CDD B3_DNA 17 109 IPR003340 GO:0003677
Tpr1g4355 510 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 348 - -
Tpr1g4355 510 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 377 508 - -
Tpr1g4355 510 MobiDBLite consensus disorder prediction 164 178 - -
Tpr1g4355 510 ProSiteProfiles B3 DNA-binding domain profile. 258 349 IPR003340 GO:0003677
Tpr1g4355 510 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
Tpr1g4355 510 SUPERFAMILY DNA-binding pseudobarrel domain 410 508 IPR015300 -
Tpr1g4355 510 Gene3D - 239 351 IPR015300 -
Tpr1g4355 510 Gene3D - 394 510 IPR015300 -
Tpr1g4355 510 CDD B3_DNA 257 347 IPR003340 GO:0003677
Tpr1g4355 510 MobiDBLite consensus disorder prediction 145 200 - -
Tpr1g4355 510 CDD B3_DNA 414 508 IPR003340 GO:0003677
Tpr1g4355 510 Gene3D - 12 113 IPR015300 -
Tpr1g4355 510 ProSiteProfiles B3 DNA-binding domain profile. 414 510 IPR003340 GO:0003677
Tpr1g4355 510 ProSiteProfiles B3 DNA-binding domain profile. 17 112 IPR003340 GO:0003677
Tpr1g4355 510 MobiDBLite consensus disorder prediction 185 199 - -
Tpr1g4355 510 Coils Coil 228 255 - -
Tpr1g4355 510 Pfam B3 DNA binding domain 414 509 IPR003340 GO:0003677
Tpr1g4355 510 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677
Tpr1g4355 510 Pfam B3 DNA binding domain 259 347 IPR003340 GO:0003677
Tpr1g4355 510 SUPERFAMILY DNA-binding pseudobarrel domain 252 348 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4355 Tpr-Chr1 50704462 50708080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4355 391 510 B3 DNA Binding Superfamily AT3G18990 38.525 2.11e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g4355 B3 6.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4355 - - mtr:MTR_1g035460 523.472