Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4350 ATGGTATCATTGAAGAAACTTGCCAAGAAGGTGAAAGCTAGTGGTGGAGCTGACCCTAACACTAACCATGAATGTTTACTTAAGGGGTACCAAGAAGAATTCTCCACAAACACAACTCCAACGGGTTATTTTGCACTTTATGTAGGGGAAGAACATCAGAGAAATGTAGTTCCAACAAGCTATCTTTCTCACCCTTTATTCAAGATGTTGTTAGAGAAATCATACAATGAATTTGGGTTTGAGCAAAGGAATGGCCTTGTAGTTCCATGTAGTGTTTCAACATTTCAAGAGGTTGTAAATGCTATTGAATGTAACAATGGAAAGTTTCACTTGGGCAAGATTTTTCATGATTTTGTTTCAAGTGTAGAAAAATAG 375 0.368 MVSLKKLAKKVKASGGADPNTNHECLLKGYQEEFSTNTTPTGYFALYVGEEHQRNVVPTSYLSHPLFKMLLEKSYNEFGFEQRNGLVVPCSVSTFQEVVNAIECNNGKFHLGKIFHDFVSSVEK* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4350 124 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 119 IPR003676 GO:0009733
Tpr1g4350 124 Pfam Auxin responsive protein 23 101 IPR003676 GO:0009733
Tpr1g4350 124 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4350 Tpr-Chr1 50658377 50658751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4350 40 110 Calmodulin-binding Proteins AT5G20810 50.704 3.24e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4350 K14488 - gmx:100790208 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4350 1 50658377 50658751 Tpr1g4350 1 50658377 50658751 ECH