Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4341 ATGCCAATCTCATATTCATATTCACTCTCAATTTCATCATCATCATCATCCATTCTACCAAAGCTAAACCCAAACCTCCGTCCAATCCAATTCCGAACCAAACAACAACATAACCGCCAATTCCCGAACCTAAAAATCCAAAACTCCTCCACCCGAACCAACAACACCACCACAATACATTTTCTAAAACCGTATCTAATTTCCCAGCAAAAACCAATCCTCTTCGGTTGGCTCTGTAGTGCTATCTCCGTTTACTCTCTCTCTAACATCCTCTCCAAATTCTCCGCCATCACCACCGCCACAACAACCGTCCACGTCACACATGGACTCGCTCTCGGCGGTTTGGTTCTTGTTCGATTGATTGCCACGTATGCACAGCATGCGCTTCTTTGGGAAGCTTCTCTCAACGCGGTTTATGATGTTCGCGTTCACGTTTTCGATCGTGTTCTGAATAGAGAACTTGCGTTTTTTGAAGCTAACGACGCCGTTTCCACTGGGGATATTGCTTATCGAATAACTGCTGAAGCTTCCGATCTTGCTGTTACCTTATACGCTCTTCTTAATACTATAGTACCTAGTACTCTGCAACTGTCTGCAATGATAATGCATATGTTGGTTATAAGTCCTTCCCTTTCTTTGATTTCAGCCATGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAAAGTCACATACTAGTGTTGCTGCTCTCTCAGCATATCTAAACGAGATCTTGCCCGCAATTCTCTTCGTGAAAGCGAACAACGCAGAGTTGCTTGAGAGTGTCAGGTTTAAGAGACTGGCCCTGATAGACAATTCTGCAAAGTTGAACAAAAAAAGGATGAAAGCGGTTATTCCCCAGGTTATACAGGCTATTTATTTTGGAGTCCTTTCCATACTTTGCGCAGGTTCGGCGGTGATTTCAAGAGGTTCATTTGATCGCTCTAGCTTGGTTTCATTCGTGACTTCGTTGCTTTTCTTGATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAGTGGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGCTATGACCCAGTTCAAAAATAAGGTGGTTGAAAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGAGTTGAAATTCTGTAGTGTCTCCTTTAAGTATAATGATGGTCTGCCTCTTATCTTAAATGAATTGAATCTCCACGTTCGGCCTGGAGAGATAGTTGCTATTGTCGGTCCTTCTGGGGGAGGGAAAACAACACTTGCAAAACTGCTGCTTCGCCTTTATGATCCTATATCTGGGGCTATACTGATTGATAACCAAAACACCCAAAACATTAGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACGGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGAGTGAAGCAGGTATCTCAAACTGCTTATGCCGACGAGTTTATCAGCAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGATCAACGTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCATTCTATCAAAATTCTTCAATATTAATTCTGGATGAGGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTAATGGAAAATCGTACGGTGCTTGTAATCTCACATCGCTTGGAAACCGTTATGATGGCTAAACGAATATTCCTTTTAGATAATGGAAAGCTAGAAGAGCTGCCTCGGTCAACTATGTTGGATGGTCATATGGATTCATTGCTATCATCTGGGCGTATCGTTTGA 1878 0.4217 MPISYSYSLSISSSSSSILPKLNPNLRPIQFRTKQQHNRQFPNLKIQNSSTRTNNTTTIHFLKPYLISQQKPILFGWLCSAISVYSLSNILSKFSAITTATTTVHVTHGLALGGLVLVRLIATYAQHALLWEASLNAVYDVRVHVFDRVLNRELAFFEANDAVSTGDIAYRITAEASDLAVTLYALLNTIVPSTLQLSAMIMHMLVISPSLSLISAMVIPCMVLVVAFLGQELRKISKKSHTSVAALSAYLNEILPAILFVKANNAELLESVRFKRLALIDNSAKLNKKRMKAVIPQVIQAIYFGVLSILCAGSAVISRGSFDRSSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTQFKNKVVEKPDAVDLDHVTGELKFCSVSFKYNDGLPLILNELNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGAILIDNQNTQNISLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKQVSQTAYADEFISKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLDGHMDSLLSSGRIV* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4341 625 Gene3D - 377 622 IPR027417 -
Tpr1g4341 625 Pfam ABC transporter transmembrane region 79 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr1g4341 625 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 28 615 - -
Tpr1g4341 625 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524
Tpr1g4341 625 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 624 IPR003439 GO:0005524
Tpr1g4341 625 Pfam ABC transporter 404 555 IPR003439 GO:0005524
Tpr1g4341 625 Gene3D ABC transporter type 1, transmembrane domain 57 366 IPR036640 GO:0005524|GO:0016021
Tpr1g4341 625 SUPERFAMILY ABC transporter transmembrane region 62 366 IPR036640 GO:0005524|GO:0016021
Tpr1g4341 625 CDD ABC_6TM_exporters 109 361 - -
Tpr1g4341 625 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 28 615 IPR039421 -
Tpr1g4341 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 605 IPR027417 -
Tpr1g4341 625 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 78 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr1g4341 625 SMART AAA_5 413 601 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4341 Tpr-Chr1 50612734 50617587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4341 377 623 Calmodulin-binding Proteins AT2G36910 43.600 8.27e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4341 K02021 - gmx:100788075 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4341 1 50612734 50617587 Tpr1g4341 1 50612734 50617587 ECH