Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4320 ATGGAGGGCAAACAAGCTATTGTGTTAGGTGTTCGTGCACCGGGACTTGTTGAGGCTCAGCCTGATAAACCTCTGGTATATGAGATTGACACAGCAGCTCATTTTTACACTGATATGGCAACCACCGACCGAGATGAGTTGATTGGATGGGCTCGCGCCATTGCCGTAAAGTTAAAGTTTGCAATTGTAATTGGGAAATCCGACAACGATATAAGAAAGCAGTATTTCAGGTTGGATTGCGAACGGGGAGGCCGGTACGTGTCAACAAATAAGAAGCTAAAATCTGATCAAACCGGCACGAGGCAATGCGGATGTCCCTTTCGACTTTGTGGTTATTGTCATGCCGATAAAACATGGCATTTAACCGTTGTAAACGGCATACATAACCACGAGTTGGACAAAGTAGTCGAAGGACAACTCATTGTCGATCGTTTGAAACCGGAAGAGAAGCAATTTATGGACGAAATGTCAAGGAATTTGGTTCTGCCTAAGAATATAATGTCCACATTGAAAGAGAGAGATCTAAACAACAAGACAACGGCATAA 546 0.4359 MEGKQAIVLGVRAPGLVEAQPDKPLVYEIDTAAHFYTDMATTDRDELIGWARAIAVKLKFAIVIGKSDNDIRKQYFRLDCERGGRYVSTNKKLKSDQTGTRQCGCPFRLCGYCHADKTWHLTVVNGIHNHELDKVVEGQLIVDRLKPEEKQFMDEMSRNLVLPKNIMSTLKERDLNNKTTA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4320 181 Pfam Transcription factor AFT 87 132 IPR014842 GO:0000981|GO:0036086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4320 Tpr-Chr1 50334786 50335331 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g4320 AFT 3.4e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4320 - - mtr:MTR_4g119600 121.324