Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4319 ATGGCGGAAGAACAACCATGTCAAGCACCTGAAGGTCACCGTCTCTGCACAAACAACTGTGGTTTCCTCGGTAGTCCGGCAACGATGAATCTCTGTTCAAAATGCTACGGTGATATTCGTATAAAGGAACAACAAGATGCTTCAACAAAATCCACAATTGAAAACGCTCTTTCGTCGTCCTCTTCTTCCGCCGTCGCATCGACCGCGTCTCCGTCGCTTTCTACATCCGAACCGATCGTTGTTTCCGTCGAATCAATTAATCCGACGCCAGCTTTGACAGAGATCGCAACGAGTTCTATAACCGTCGGTTCGGCTGGTTCGGTTCAACCGAACCGGTGTGTGACGTGTAGAAAGCGCGTGGGGTTGACCGGGTTTAGGTGTAGATGCGGGTCTACGTTTTGTGGGTCCCACAGGTATCCAGAGAGACACGGCTGTAGCTTTGATTTTAAGACGGTGGGGAGAGAAGAAATAGCTCGAGCGAATCCTTTGATTAGAGCGGAGAAGCTTCAGAGGATTTGA 519 0.4971 MAEEQPCQAPEGHRLCTNNCGFLGSPATMNLCSKCYGDIRIKEQQDASTKSTIENALSSSSSSAVASTASPSLSTSEPIVVSVESINPTPALTEIATSSITVGSAGSVQPNRCVTCRKRVGLTGFRCRCGSTFCGSHRYPERHGCSFDFKTVGREEIARANPLIRAEKLQRI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4319 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Tpr1g4319 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Tpr1g4319 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 61 - -
Tpr1g4319 172 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Tpr1g4319 172 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Tpr1g4319 172 Gene3D - 1 76 - -
Tpr1g4319 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Tpr1g4319 172 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Tpr1g4319 172 Pfam AN1-like Zinc finger 115 149 IPR000058 GO:0008270
Tpr1g4319 172 PANTHER BNAC06G14100D PROTEIN 1 172 - -
Tpr1g4319 172 SUPERFAMILY AN1-like Zinc finger 108 167 IPR035896 -
Tpr1g4319 172 Gene3D - 93 168 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4319 Tpr-Chr1 50294772 50296070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4319 1 172 C2H2 Transcription Factor Family AT3G52800 54.335 1.47e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4319 - - lang:109347531 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4319 1 50294772 50296070 Tpr1g4319 1 50294772 50296070 ECH
Tpr6g0753 6 6238194 6239660 Tpr1g4319 1 50294772 50296070 PCT