Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4312 ATGCAAGTGTTAGAAGATCAACTCATGTTGGTTTCAAAGGATCAACAACAAATCATAAAAGGGAAGCGAACGAAGCGTCAAAGGTTACCTTCTCCACTTAGGTTAGCCATGCCGGGTGTGTCAAATAATTCTTACAATGAAGGTACAAGTTATAATGATAACATGTACAAGGAAAATTCGAAAGGAATTGAATTCGTTAAAATTGAATCGTGCAACCGATCAGAAGAAGAAAAAGAAGAAGAAGATATGGCGAATTGTTTGATTTTATTAGCTCAAGGTCATAATCGTCATCATGATCATCAAAATCAAGAACATGTGTTGAATCATCATGATTACAATAACAACAAATCTTCTTCGAATTTTTATTTTTACGAATGCAAGACTTGCAATCGATGCTTCCCTTCGTTTCAAGCACTTGGTGGTCATAGAGCAAGTCATAGCAAACCTAATAAGGCAAATTGTAACAATATTGTTACACAACAAAAGCAAGAAGTTACAACATCTCCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCATTGCAAGCCTTTACGGCCGCAACCCCTATTACTACTATTACTACTACTGCTACAAAAAAATCAAAAGTTCACGAGTGTTCGATCTGTGGTGCCGAATTTTCATCTGGGCAAGCATTGGGAGGACATATGCGACGACATAGAACTCTTGTGAGCACATCAACAATGACGACAACAACGACAACAACGCCATCTGTGAGTTTGAGTATTGGTAGCCGTAGCCCTAAATCTCATGAAGCTAAGAAACCAAGAATTAATTATGGTTTAAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATCAATCAAAGTTTTCATTTCAACAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 942 0.3673 MQVLEDQLMLVSKDQQQIIKGKRTKRQRLPSPLRLAMPGVSNNSYNEGTSYNDNMYKENSKGIEFVKIESCNRSEEEKEEEDMANCLILLAQGHNRHHDHQNQEHVLNHHDYNNNKSSSNFYFYECKTCNRCFPSFQALGGHRASHSKPNKANCNNIVTQQKQEVTTSPFVDDHYDPTMNTILSLQAFTAATPITTITTTATKKSKVHECSICGAEFSSGQALGGHMRRHRTLVSTSTMTTTTTTTPSVSLSIGSRSPKSHEAKKPRINYGLKLDLNLPAPEVDQRDQSKFSFQQPRENVIAFSNSSLVDCHY* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4312 313 PANTHER ZINC FINGER PROTEIN ZAT5 10 313 - -
Tpr1g4312 313 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Tpr1g4312 313 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Tpr1g4312 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 230 IPR013087 -
Tpr1g4312 313 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 10 313 - -
Tpr1g4312 313 MobiDBLite consensus disorder prediction 237 265 - -
Tpr1g4312 313 SMART c2h2final6 124 146 IPR013087 -
Tpr1g4312 313 SMART c2h2final6 208 230 IPR013087 -
Tpr1g4312 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Tpr1g4312 313 Pfam C2H2-type zinc finger 124 149 - -
Tpr1g4312 313 Pfam C2H2-type zinc finger 207 231 - -
Tpr1g4312 313 Gene3D Classic Zinc Finger 188 253 - -
Tpr1g4312 313 MobiDBLite consensus disorder prediction 237 257 - -
Tpr1g4312 313 SUPERFAMILY beta-beta-alpha zinc fingers 124 230 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4312 Tpr-Chr1 50192718 50194097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4312 1 313 C2H2 Transcription Factor Family AT5G04390 35.185 5.26e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g4312 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4312 - - mtr:MTR_1g062780 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1161 1 10482033 10484001 Tpr1g4312 1 50192718 50194097 ECH
Tpr1g4312 1 50192718 50194097 Tpr1g1161 1 10482033 10484001 ECH
Tpr1g4312 1 50192718 50194097 Tpr1g4312 1 50192718 50194097 ECH
Tpr7g3740 7 46291310 46292519 Tpr1g4312 1 50192718 50194097 ECH
Tpr4g1628 4 16637003 16638259 Tpr1g4312 1 50192718 50194097 ECH
Tpr1g4312 1 50192718 50194097 Tpr7g3740 7 46291310 46292519 ECH
Tpr1g4312 1 50192718 50194097 Tpr4g1628 4 16637003 16638259 ECH