LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g4311	ATGGCGGTTCCTGGTAGGCGCAATGGTCTGAACGATGACGATGATGAAGAATCCAACGGTCTTTTCGAAGAAGAAGTTCTCGTTGAAGAATCTGACACTCCTCCTCATCTTCGTGACCTCTCCCATGCCGCTCAAAACGGCGACCTCAACGCCCTCCGCCTCGCAATCGATAATTTGAGTGGTAGTATTGATGAACCGGTGGAGGATGGCGATACGGCTCTTCATTTGACCTGTTTATATGGCCATTTTCAATGCGCACAGCTGCTACTAGAAAGAGGAGCTGACTTGGAGGCTAAGGATGAAGATGGGGCAATTCCTTTGCACGATGCATGTGCGGGAGGATTTTTGGAGATAGTCCAACTTCTATTTAACAGAGCTAGTGACTCTGAGCATATCAAAAGGATGCTAGAATCAGTTGATTCCGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGCTGATGTAATTAGGTTGTTGCTGTCTAATGGCGCGTCAACCACAAAGGAAAACTTATATGGGAAGACCCCTGCAGAGTTACCTGAACACATGACAGAAGCTAGGAGGTTGCTTGAAGCTGCTGCTGCTGCCATGGCAATCTAA	609	0.4778	MAVPGRRNGLNDDDDEESNGLFEEEVLVEESDTPPHLRDLSHAAQNGDLNALRLAIDNLSGSIDEPVEDGDTALHLTCLYGHFQCAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLFNRASDSEHIKRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASTTKENLYGKTPAELPEHMTEARRLLEAAAAAMAI*	203

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g4311	202	ProSiteProfiles	Ankyrin repeat profile.	69	101	IPR002110	GO:0005515
	Tpr1g4311	202	SUPERFAMILY	Ankyrin repeat	40	182	IPR036770	-
	Tpr1g4311	202	Gene3D	-	34	201	IPR036770	-
	Tpr1g4311	202	ProSiteProfiles	Ankyrin repeat profile.	142	174	IPR002110	GO:0005515
	Tpr1g4311	202	ProSiteProfiles	Ankyrin repeat region circular profile.	102	128	-	-
	Tpr1g4311	202	Pfam	Ankyrin repeats (3 copies)	102	171	IPR002110	GO:0005515
	Tpr1g4311	202	Pfam	Ankyrin repeats (3 copies)	40	100	IPR002110	GO:0005515
	Tpr1g4311	202	ProSiteProfiles	Ankyrin repeat region circular profile.	69	101	-	-
	Tpr1g4311	202	ProSiteProfiles	Ankyrin repeat profile.	102	134	IPR002110	GO:0005515
	Tpr1g4311	202	ProSiteProfiles	Ankyrin repeat region circular profile.	142	173	-	-

Showing 1 to 10 of 16 entries

Previous1 2Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g4311	10	185	Ion Channels	AT2G25600	30.542	1.95e-13	66.6

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g4311	-		-	gmx:100527544	307.375

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr1g4311	1	50187216	50189055	Tpr1g4311	1	50187216	50189055	ECH

Showing 1 to 1 of 1 entries