Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4298 ATGGAAATGGAAACCACCAACCAAAACCTCGAAACCGACACTTTCAAGATGCAACAGCAACGGCGGCGAGGTCAGTTGGTGGTGAACGGTTACTTCGTTTACACACGACGTAAGAGGATCGAGCATGATTCCGACAACGAGAAAGCGAAGAGGCTCAAAACCGATGAAAATGAACAAGTTAAGGTGAAAATTGGTGAGGAAGTGAAGAACGACGTCGTTTTATGGACTTCGAAACGGCAGCGTAGACCGTCGTTTAAGTTGCAGGTTGAATCAGAAGATGATGGTTCTGCTGATAAGGTAGTTGCTCGCGTTGTGAATACGAAGAAGAGCGTTGCGTCGTTTAGCGAAAAGCTATTGTCTGTAAAAGAGCTCTTTGATACTGGTTTGCTCGATGGTGTTCCCGTTGTTTACGTCGGTTGTAAGAAGGAGGCTTCAGATTCGGGATTGCAGGGTGTAATTGCTGGCGGGGGGATATTGTGCTCGTGCTGTTTGTGCAATGGACGCAGAATTATTCCCCCCTCCCAATTTGAGATTCATGCGAACAAAATATATAAAAGGGCAACGCAGTATATTTGCTTTGAAAATGGGAAGAGTCTGCTTGAACTACTGGGAGTTTGCAGGGCAGCTCCCTTACATGCTTTGGAGGCCACTATTCAAAACTTTCTTTGTTTACCGCCTGAAGAGAAATATTTTACCTGCAGGAGTTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTGGGGCTTATATGCCATTCTTGCATCGAAACAAGTAAATCTGAAAATGGTTCTATGCGTGCGGTTGGCAAAAGAGTCAGGACTCCTCGACCGTATTTGTTCTCTAGTCCATCTAGTATTTCTGAAACGTGTGTCTCATCAAAAACTAAGAAACAAAAGAAGAAGAGAACAAAGTCATCAAAACGGGTTAGCATGTCAAAATCTTCCAAGAAGAGTGCTTCAGGGCCTGTTCTTATCCAGAAGAATAGTTTGTGCAACATGGAAACAAAGTCATCAAAACTGACAGTCAAGTTGAAGATTGCTCCAATTACGTCAAATTCAAAGTGTTCATCTCCACAAAATAAGAGTCAATGGAAGATCAATAAAAAGCATCAGCGATTGCATAAAATAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCCCGTGGACAGAAATATCTTGAGGGTATTAAAATGAAATCTGGAATTATTTGTCGATGCTGCAACACTGAGATCAGCCCTGCACAGTTTGAGATTCATGCAGGGTGGGCTTATCGTAGGAAGCCTTATGCATATATCTACACTTCAAATGGTGTGTCTCTCCATGAGTTGGCATTATTCCTCTCAAAAGATCGCAAATGCACTGCAAAATATAATGATCTTGCATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCGAGTACTCCACGACGTTGCCGGTACTGTCCAATCTGTCAACACAAGTTCCTCGGAGAAGGATCTGTGGCTCTCAATCCTGATGCTGTGGCAGCTGGAAGAGTTGAAGGAGTTGATCCTATAGAACAGATTGCCAAGAGATGCATTCGCATAGTGAAAGATATTGAAGCTGAGATTGGTGGATGTGCTGGTGGATGTGCTTTATGCAGAGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGTACAATAATAATATGTGATCAGTGTGAAAAGAAATATCACGTGGGCTGTTTGAGGGATCATAAAATGGCCTTTTTGAAGGAATTGCCGGAAGGGGATTGGCTTTGCTGCAATGATTGCACAAGAATACATTCTATTTTAGGGAACCTCCTGGTTAGGGTGGCTGAGAGTCTCCCTGAATCTCTTTTGGGTGTTATAAAGAAAAAGCAAGAGGAAAGATGTTTGGAGCCCCTTAATGAGATTGATATAAGATGGAAACTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCGTTGCTGTTGGAGGCACTGTCAATATTCAATGAATGCTTTGATCCTATAGTTGACGCAGCTACTGAACGTGACCTTATTCCTTCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATTCGTGGTATCTGCGGGCATGCTTCGGATTTTTGGGAGAGATATTGCAGAACTCCCTTTAATTGCTACAAGACACACGAACCGTGGAAAGGGCTACTTCCAAACATTGTTCTCGTGTATTGAAAGGTTGCTGGCCTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGTATCCATATGGATAAATAAATTTGGGTTTAGCAGGATGAGACCTGAGCAGCTTGTCAGCTATAGAAAGAACTGCCAGCAGATGATGGCATTCAAAGGGACAGTTATGCTTCATAAAGCAGTACCTCAATGTCGGGTAATTAAATCATGA 2511 0.4273 MEMETTNQNLETDTFKMQQQRRRGQLVVNGYFVYTRRKRIEHDSDNEKAKRLKTDENEQVKVKIGEEVKNDVVLWTSKRQRRPSFKLQVESEDDGSADKVVARVVNTKKSVASFSEKLLSVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRIIPPSQFEIHANKIYKRATQYICFENGKSLLELLGVCRAAPLHALEATIQNFLCLPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCIETSKSENGSMRAVGKRVRTPRPYLFSSPSSISETCVSSKTKKQKKKRTKSSKRVSMSKSSKKSASGPVLIQKNSLCNMETKSSKLTVKLKIAPITSNSKCSSPQNKSQWKINKKHQRLHKIIFEEDGLPDGAEVAYYARGQKYLEGIKMKSGIICRCCNTEISPAQFEIHAGWAYRRKPYAYIYTSNGVSLHELALFLSKDRKCTAKYNDLACIVCWDGGNLLLCDGCPRAFHKECASVSSTPRRCRYCPICQHKFLGEGSVALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEIGGCAGGCALCRGSDFSRSGFGPRTIIICDQCEKKYHVGCLRDHKMAFLKELPEGDWLCCNDCTRIHSILGNLLVRVAESLPESLLGVIKKKQEERCLEPLNEIDIRWKLVNGKVASPETRPLLLEALSIFNECFDPIVDAATERDLIPSMVYGRNLQTQDFGGMYCALLMVNSFVVSAGMLRIFGRDIAELPLIATRHTNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAVSIWINKFGFSRMRPEQLVSYRKNCQQMMAFKGTVMLHKAVPQCRVIKS* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4298 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 619 IPR013083 -
Tpr1g4298 836 Pfam Tify domain binding domain 151 203 IPR032308 -
Tpr1g4298 836 Pfam Tify domain binding domain 407 451 IPR032308 -
Tpr1g4298 836 ProSiteProfiles Zinc finger PHD-type profile. 466 511 IPR019787 -
Tpr1g4298 836 SUPERFAMILY FYVE/PHD zinc finger 561 614 IPR011011 -
Tpr1g4298 836 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 710 801 IPR016181 -
Tpr1g4298 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 544 IPR013083 -
Tpr1g4298 836 Gene3D - 657 826 - -
Tpr1g4298 836 SUPERFAMILY FYVE/PHD zinc finger 464 512 IPR011011 -
Tpr1g4298 836 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 8 834 - -
Tpr1g4298 836 PANTHER AUTOIMMUNE REGULATOR 8 834 - -
Tpr1g4298 836 SMART PHD_3 468 509 IPR001965 -
Tpr1g4298 836 SMART PHD_3 560 617 IPR001965 -
Tpr1g4298 836 MobiDBLite consensus disorder prediction 296 312 - -
Tpr1g4298 836 MobiDBLite consensus disorder prediction 290 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4298 Tpr-Chr1 50061754 50069782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4298 120 834 PHD Transcription Factor Family AT2G36720 51.096 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4298 - - gmx:100798276 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0840 6 7225266 7235374 Tpr1g4298 1 50061754 50069782 PCT