Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4293 ATGTCAGTGCTAATGGTCACCAGTTTAGGGGACCTTGTAATCGATTTACACACCCAAAAGTGTCCCTTAACCTGCAAGAACTTCTTGAAGCTTTGCAAGATTAAGTATTATAATGGTTGTTTATTTCACACTGTTCAAAACGATTTCACTGCCCAAACTGGTGATCCAACTGGAACTGGAACTTCTGGTGATTCTATTTACAAGTTTCTTTATGGTGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCTAGTGCGGGAGAGAATATGAATGCTTCACAGTTCTATATAACTCTTCGTGATGACCTTGATTACCTTGATGGAAAGCACACAGTTTTTGGGGAGGTAGCCGAAGGATTTGAGACTTTGACTAGAATAAATGAGGCTTTTGCAGATGGAAAGGGCAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAGGATCCCTTTGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGGTTCACCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTCCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGAACTTGAAGAAGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAATCCAGTTACTGAGGACGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTTGAGGACAAACAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTCGCAAAACTGTGGTCACAATACATGCGAAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCCCGGGATTGCACTGGAGATGCTACAATGAAACAATCCTCAAAATACATCTTGAAGGACAATAATTCCCAACGTGGTGGACATAATGCAAGATATGAAATGGTTTTTGATGGAGATAACACAGAAAGTCCAAGGCATGAAACAAAACACCAAAGACATGACAGGGATGAGCGAGATGATAAAGTAGGTAGGAGGGAAAATTTTAAAGAACGTAGTCATAGAGGTCATAGTGATCAGGAGATGGCTGGCTCAAATAACAGAGATAGGTATGCCAACAGAAGCAGAGGGCTTGAAGGAAATGGAGATGATAAAGCACGACTGGAAAGAAGTGCGAGAGGTTCGGATTCTTTTGCTGGCAAGAAAGACAGAGAAAGGCAAATGGGAAGACAGAGAGATGATGACTACCGACGGAAAGATGAGCTAGACTCGAGGAAAAGAGACTTAGGTGATAGCTACACAGAAAGCCGGGCTAGTCGAGATGATAGGAGAAAAACAGATGGTAGCCATTCGGATAAGAGATATGACAGAGATTATAGGAAGAGAACTGAAGACAGTGAAAGGCAAGATGTGAAGATTGATTCAGGACGAAGAAAACGAAGCCCAGATGTTGACGATTACAAACGTAGAAGGAATGATGAGGATTGCAGAGAAGATTTAAAGATTGATTCCAGACGAAGAAAACAAAGCCCGGATAATGGGGACTACAAACATGGAGGGGACCATGAGGATTACAAACATAGGAGGGAAGATCGAGGAAATAGAAGACATGACACTGATAGAAGGCATCATGGCGACAAAAGATGA 1848 0.4123 MSVLMVTSLGDLVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQNDFTAQTGDPTGTGTSGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENMNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAFADGKGRPFKNIRIKHTYILEDPFDDPPQLPEFIPEGSPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDATMKQSSKYILKDNNSQRGGHNARYEMVFDGDNTESPRHETKHQRHDRDERDDKVGRRENFKERSHRGHSDQEMAGSNNRDRYANRSRGLEGNGDDKARLERSARGSDSFAGKKDRERQMGRQRDDDYRRKDELDSRKRDLGDSYTESRASRDDRRKTDGSHSDKRYDRDYRKRTEDSERQDVKIDSGRRKRSPDVDDYKRRRNDEDCREDLKIDSRRRKQSPDNGDYKHGGDHEDYKHRREDRGNRRHDTDRRHHGDKR* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4293 615 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Tpr1g4293 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Tpr1g4293 615 Gene3D - 326 380 - -
Tpr1g4293 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Tpr1g4293 615 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Tpr1g4293 615 SMART rrm1_1 244 317 IPR000504 GO:0003723
Tpr1g4293 615 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Tpr1g4293 615 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Tpr1g4293 615 MobiDBLite consensus disorder prediction 385 615 - -
Tpr1g4293 615 CDD cyclophilin_RRM 4 169 IPR035538 -
Tpr1g4293 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Tpr1g4293 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Tpr1g4293 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Tpr1g4293 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Tpr1g4293 615 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 159 IPR002130 GO:0000413|GO:0003755
Tpr1g4293 615 Gene3D - 182 324 IPR012677 -
Tpr1g4293 615 MobiDBLite consensus disorder prediction 439 615 - -
Tpr1g4293 615 MobiDBLite consensus disorder prediction 386 431 - -
Tpr1g4293 615 CDD RRM_PPIL4 240 322 - -
Tpr1g4293 615 Gene3D - 1 172 IPR029000 -
Tpr1g4293 615 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Tpr1g4293 615 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Tpr1g4293 615 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 490 IPR035542 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4293 Tpr-Chr1 49968329 49977797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4293 7 166 U-box Gene Family AT5G67530 40.000 4.35e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4293 K12735 - gmx:100776900 906.746