LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g4285	ATGGATACAATGTTGGTTCCTCCATGGCTCAAACCACTTCTTAACACATCATTTTTCAATGTGTGTCGGATTCACGGTGACGCCGCAAGAAGTGAATGTAACATGTTTTGTCTAGATTGCAATGTTGATGCCTTTTGCTTCTATTGTCGTTCTTCAAGACACAAGGATCATCAAGTCATTCAGATAAGACGATCTTCGTATCACGATGTAGTGAGGGTGGGTGAAATTCAGAAAATGTTGGACATTAGTGGAGTTCAAACATATGTGATTAATAGTGCTAGAGTTTTGTTTCTGAATGAAAGGCCTCAACAAAAAATTGGAAAAGCAGTTTCTTACATTTGTGAGATTTGTGGAAGAAGCCTTTTAGATCATGTTCGGTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAAGATAAATGGGAATGCAAGCTTTGTTATAGATGCTAATAACAAGGAAGTATCAACAATGGAAGAAGGGATGTCAAGACAACAAGAAGAAGAGTTGCGTGAAGGCTCACAACAAGGCATGGATCCAACCACCCCTCCTTCAAACTCAAGGAGAAGAAAAGGGATTCCTCATAGGGCCCCTTTTGGATCCTAA	603	0.3964	MDTMLVPPWLKPLLNTSFFNVCRIHGDAARSECNMFCLDCNVDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVGEIQKMLDISGVQTYVINSARVLFLNERPQQKIGKAVSYICEICGRSLLDHVRFCSLGCKLVGIKINGNASFVIDANNKEVSTMEEGMSRQQEEELREGSQQGMDPTTPPSNSRRRKGIPHRAPFGS*	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g4285	200	MobiDBLite	consensus disorder prediction	156	200	-	-
	Tpr1g4285	200	Pfam	PLATZ transcription factor	63	134	IPR006734	-
	Tpr1g4285	200	PANTHER	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	2	199	-	-
	Tpr1g4285	200	MobiDBLite	consensus disorder prediction	159	173	-	-
	Tpr1g4285	200	SUPERFAMILY	B-box zinc-binding domain	19	64	-	-
	Tpr1g4285	200	Gene3D	Classic Zinc Finger	20	65	-	-
	Tpr1g4285	200	PANTHER	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	2	199	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g4285	Tpr-Chr1	49859910	49862057	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	PLATZ	Tpr1g4285		PLATZ	3.3e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g4285	-		-	gmx:100809455	336.65

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g0835	6	7175782	7179065	Tpr1g4285	1	49859910	49862057	PCT