Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4281 ATGGCAGAATCTTCAACAACCTCTCCACCACCAGCCACTAAAAGCTGGGCCGATCAAGCAGACGACGAAGATGCCAATCCATCTTCAAGCTCCGCCATCGGAACCGAAACACCTCCGATCGATGAATTAATACTCAACGAAGACAAGAAATCGTCTTCTAAAATGTTAGACGATCCCGATGACTCCAACATTCAAGCGGTTACATCTGGTGACACTCCTTACACGTCTGCAGCGACGTTTGAAGAGTTGTCAATCTCGCCGGAGCTTTTGAAGGGACTCTATGTAGAGATGAAGTTTCAAAAACCTAGCAAAATTCAAGCTGTAAGCTTGCCAATGATTCTTAATCCTCCACATAGGGATTTGATAGCGCAGGCACATAATGGTTCAGGAAAAACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCAACTTTGCAAGCTCCTCAAGCTCTTTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGGAAGTACACAGGGATTAGCTCAGAATGTGCAGTTCCTATGGACAAAAGGGATTCAATTCCGATTTCAAAAAGGCCGCCTATTTCGGCTCAGGTTGTTATTGGTACTCCTGGCACGATTAAGAATTTGATGACTCATAAGAAACTTGGGGTGACAAGATTGAAGATTCTTGTTTTTGATGAGGCCGATCAAATGCTCGCCGAGGATGGATTTAAAGATGATTCTCTGAGGATAATGAAAGAAATAGAAAAATTCAATTCAAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGATATTGTCAAGAATTTTGCTACAAGGATTGTTGAGAAGAAGGAGCATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTGAAGCAGTACAAAGTTCGTGTTCCTGATGAACTCGAGAAGATTGAAGTGATTAAAAATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCATAAGGCTCTTGTTGATTTAGGCTATGAGGTTACATCCATACAAGGTGCTCAAGAACATGACGAGAGAGACAAGATCGTCAAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATCTCCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTACGATCTTCCAATTAAGCATGCTGACTACCGTGGCCGTGAACCTGATCCTGATTTTGAGGTGTATTTACATAGGGTTGGTAGGGCTGGGCGATTTGGACGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAAGGATGAAAAGACCGTGTCAAAGATTGAAAAGCATTTTGGCACACATATAAAAGAGGTGCAACGAAGTAATGTTGAAGACTATAAAGCTGCTCTTAAGGAATCTGGTTTACTGTTTTGA 1467 0.411 MAESSTTSPPPATKSWADQADDEDANPSSSSAIGTETPPIDELILNEDKKSSSKMLDDPDDSNIQAVTSGDTPYTSAATFEELSISPELLKGLYVEMKFQKPSKIQAVSLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSECAVPMDKRDSIPISKRPPISAQVVIGTPGTIKNLMTHKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDIVKNFATRIVEKKEHNKLFVKKEELSLDAVKQYKVRVPDELEKIEVIKNYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGAQEHDERDKIVKEFKDGLTQVLISTDLLARGFDQQQVNLVINYDLPIKHADYRGREPDPDFEVYLHRVGRAGRFGRKGAVFNLICDEKDEKTVSKIEKHFGTHIKEVQRSNVEDYKAALKESGLLF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4281 488 MobiDBLite consensus disorder prediction 1 72 - -
Tpr1g4281 488 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 107 IPR014014 GO:0003724
Tpr1g4281 488 MobiDBLite consensus disorder prediction 42 57 - -
Tpr1g4281 488 CDD SF2_C_DEAD 302 446 - -
Tpr1g4281 488 Gene3D - 57 295 IPR027417 -
Tpr1g4281 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 485 IPR001650 -
Tpr1g4281 488 Gene3D - 296 478 IPR027417 -
Tpr1g4281 488 Pfam Helicase conserved C-terminal domain 315 437 IPR001650 -
Tpr1g4281 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 452 IPR027417 -
Tpr1g4281 488 SMART ultradead3 98 305 IPR014001 -
Tpr1g4281 488 SMART helicmild6 344 437 IPR001650 -
Tpr1g4281 488 PANTHER DEAD-BOX HELICASE DBP80 57 468 - -
Tpr1g4281 488 CDD DEADc_DDX19_DDX25 85 282 - -
Tpr1g4281 488 Pfam DEAD/DEAH box helicase 104 276 IPR011545 GO:0003676|GO:0005524
Tpr1g4281 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 288 IPR014001 -
Tpr1g4281 488 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 57 468 - -
Tpr1g4281 488 MobiDBLite consensus disorder prediction 22 36 - -
Tpr1g4281 488 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4281 Tpr-Chr1 49805540 49813336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4281 79 476 Eukaryotic Initiation Factors Gene Family AT1G72730 36.725 6.51e-71 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4281 K18655 - gmx:100778091 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4281 1 49805540 49813336 Tpr1g4281 1 49805540 49813336 ECH