Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4251 ATGGCGGATTCTGAGATAGAAACGGCTAAACTGGCGTCACTTTACGTCGGCGATCTTCACTCCGATGTAACCGACGATCTTCTCTATAAGGCATTTTCGGAATTCAAGAGCCTCATTTTCGTTCGCGTCTGTAAGGATTCAGCGACTGGAAAATCCCTCTGTTACGGTTACGTCAACTTCACTTCTCATCAAGAAGCAATTCGTGCAATCGAACTGAAGAATCATTCTTTACTCAATGGAAAAGTGATAAGGGTCATGTGGTCAAGTCGTGATGCTGATGCAAGGAGAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCAGAATCCATAGATAATGTGGGACTACATGATTTATTTCACAAATATGGGAATATTTTGTCCAGCAAAATTGAAATGTCTGAGGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCCAGAAATTGAATGGCTCTACTGTGAGAGATAAGAAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGTTCTTATCCTGTTCCGGATGCCAAGGATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCTCATCTTAAAGAAAAGTTCTCCTCTTTTGGAAAGATTAGTAGCTTGGCTATTGCAAAGTATGGGAATGGGATGTCAAAAGGCTTTGCATTTGTGAACTATAACCACCCAGATGATGCTGGACGAGCAATGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACTTGTATGTTGCAAGGGCACAAAAAAAGGTTGAACGTGAACAGATATTGCATCACTTGTTTGTGGAAAAATGCAAGGAACAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATAGATGATAGCGTTAGTGATGAAGAACTAAGGGTCCAGTTCAGTGCATGTGGCACAATATTGTCTGCAAAAATTATGCGAGATGATAAAGGGATTAGCAAGGGGTTTGGTTTTGTTTGTTTCTCCACCCTGGATGAGGCTGTTAAGTCTGTGAACAGTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGCTTTTGCTCAGAAGAAAGAGGTTAGGAAAAGATTATTGCAGCTCAAACATGCTCAGAAACTAGAAGGATTAACTGGACCTTCATCTGCTGTTATCCGTGGTGCACCTCATCCTCTCATCTACGCAGCTACTGGTGTTGTTTATCACCCTTTGGGATCAGGATTGAGTGCTAATGGCTCTGCAGCACCTTCTAAAGCATTTCAACAATCACCAGCTTCTACTATTTCCATCAATGGTAAGCAGCATGGGATAGACATGAGAGGGATGAATGACAATACGAATTCAAAAGAGTCAGGACAGGTCAATTATGTGGCTAGTGGATGCCAACAGGAGATTGAAGACAAAGCTGGAACTTCATCTGTTATGCAGGTTCTTGACCTTCAGAAGACCAAAGTTTCTGGCCAGGATGTACTTCATTCAAATTCTATTGCAGCTAAGGTTGCAGTGATTTGA 1551 0.4094 MADSEIETAKLASLYVGDLHSDVTDDLLYKAFSEFKSLIFVRVCKDSATGKSLCYGYVNFTSHQEAIRAIELKNHSLLNGKVIRVMWSSRDADARRSGRGNVFVKNLAESIDNVGLHDLFHKYGNILSSKIEMSEDGKSKGFGYIQFDSEESANDAIQKLNGSTVRDKKIYVGKFIRKSERSYPVPDAKDTNLYVKNLDPDITEAHLKEKFSSFGKISSLAIAKYGNGMSKGFAFVNYNHPDDAGRAMEAMNGSQFGSKNLYVARAQKKVEREQILHHLFVEKCKEQNLKYKGSNIYVKNIDDSVSDEELRVQFSACGTILSAKIMRDDKGISKGFGFVCFSTLDEAVKSVNSFNGCMFHGKPLYVAFAQKKEVRKRLLQLKHAQKLEGLTGPSSAVIRGAPHPLIYAATGVVYHPLGSGLSANGSAAPSKAFQQSPASTISINGKQHGIDMRGMNDNTNSKESGQVNYVASGCQQEIEDKAGTSSVMQVLDLQKTKVSGQDVLHSNSIAAKVAVI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4251 516 PANTHER POLYADENYLATE-BINDING PROTEIN 7 477 - -
Tpr1g4251 516 Gene3D - 176 276 IPR012677 -
Tpr1g4251 516 CDD RRM1_I_PABPs 13 91 - -
Tpr1g4251 516 Gene3D - 102 173 IPR012677 -
Tpr1g4251 516 Gene3D - 281 380 IPR012677 -
Tpr1g4251 516 SUPERFAMILY RNA-binding domain, RBD 13 180 IPR035979 GO:0003676
Tpr1g4251 516 PANTHER RNA BINDING PROTEIN 7 477 - -
Tpr1g4251 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Tpr1g4251 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Tpr1g4251 516 SMART rrm2_1 192 264 IPR003954 GO:0003676
Tpr1g4251 516 SMART rrm2_1 295 367 IPR003954 GO:0003676
Tpr1g4251 516 SMART rrm2_1 101 173 IPR003954 GO:0003676
Tpr1g4251 516 CDD RRM2_I_PABPs 98 174 IPR045305 -
Tpr1g4251 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Tpr1g4251 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Tpr1g4251 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Tpr1g4251 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Tpr1g4251 516 SMART rrm1_1 192 264 IPR000504 GO:0003723
Tpr1g4251 516 SMART rrm1_1 295 367 IPR000504 GO:0003723
Tpr1g4251 516 SMART rrm1_1 13 86 IPR000504 GO:0003723
Tpr1g4251 516 SMART rrm1_1 101 173 IPR000504 GO:0003723
Tpr1g4251 516 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 476 IPR006515 GO:0003723
Tpr1g4251 516 SUPERFAMILY RNA-binding domain, RBD 190 375 IPR035979 GO:0003676
Tpr1g4251 516 Gene3D - 2 101 IPR012677 -
Tpr1g4251 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Tpr1g4251 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4251 Tpr-Chr1 49460729 49464530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4251 12 437 Eukaryotic Initiation Factors Gene Family AT2G36660 58.065 2.74e-168 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4251 K13126 - gmx:100804671 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4251 1 49460729 49464530 Tpr1g4251 1 49460729 49464530 ECH
Tpr6g0830 6 7149660 7154640 Tpr1g4251 1 49460729 49464530 PCT