Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4236 ATGGTTCTCAAGACCGAATTGTGCCGTTTCAGTGGTGCCAAGATCTATCCTGGGAGAGGAATCAGATTTATCCGTAGCGATTCTCAGGTTTTCTTGTTTGTCAACTCGAAATGCAAAAGGTATTTCCACAACAAGTTGAAGCCCTCGAAACTTACATGGACTGCCATGTATAGGAAGCAACATAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGTAGAGCTACCAAAAAACCTTACTCAAGGTCTATTGTTGGTGCTACTTTGGAAGTTATCCAGAAGAAAAGATCGGAGAAGCCAGAGGTTCGGGATGCTGCCAGAGAAGCTGCACTTCGTGAAATTAAAGAGAGGGTTAAGAAAACCAAGGATGAGAAGAAGGCGAAGAAAGCAGAAAGTCAGGCTAAGGCACAAAAGAATGCAGGAAAAGGAAATGTTACGAAGGGTGCTGCATCAAAAGGTCCTAAGCTTGGTGGTGGAGGCGGGAAGCGTTGA 495 0.4505 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKTKDEKKAKKAESQAKAQKNAGKGNVTKGAASKGPKLGGGGGKR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4236 164 MobiDBLite consensus disorder prediction 114 136 - -
Tpr1g4236 164 Coils Coil 112 141 - -
Tpr1g4236 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Tpr1g4236 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Tpr1g4236 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Tpr1g4236 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
Tpr1g4236 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Tpr1g4236 164 Gene3D - 69 148 - -
Tpr1g4236 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Tpr1g4236 164 MobiDBLite consensus disorder prediction 114 164 - -
Tpr1g4236 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Tpr1g4236 164 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4236 Tpr-Chr1 49225948 49227805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4236 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 85.987 6.69e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4236 K02896 - csv:101206866 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4236 1 49225948 49227805 Tpr1g4236 1 49225948 49227805 ECH