Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4232 ATGATGGAAGCCAATGGAATGTTTTCTACCATCACTTCTTCTGGTTTGCTTGGTGTTATTGATACCCCTTTACACCAACAACAACAGCAGCAGCAACAACAACAACAACAACAACAGAATCTTCCTAATCAGCAACAAAATCCTCATCATTTGCACCATTCCCAAGTTGTTTCTTATGCTCCCCAAGAACAACAATTACATCAGTCAATAAAACATGGGTACCCTCCATTTTCTTCTTCCAAGAACAAAATTCAGCAGCAGCAGCAGCAACAAAGCTCTCAGGTGAGTGATGAAGATGAGCCAAATTTTCCAGCTGAAGAAAGTTCTGGTGATCCAAAGAGAAAGATTTCACCTTGGCAAAGAATGAAATGGACTGATACAATGGTAAGGCTATTGATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTTCTGAAGGGAATGATCCAAGTAAGAAAAAGTCTAGTGGTTTGTTACAGAAGAAAGGAAAATGGAAATCTGTTTCAAGGGCTATGATGGAAAAAGGGTTTTATGTGTCACCTCAACAATGTGAAGATAAGTTTAATGATTTGAATAAAAGGTATAAGAGAGTTAATGATATACTTGGAAAAGGAACAGCTTGTAGAGTTGTTGAGAATCAGAATTTGTTGGATACAATGGATTTGACACCAAAGATGAAAGATGAAGTTAGGAAATTGCTTAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGTGGTGCTGGTGGTGGTGCTTCTGGTTCTAATGTTCATCATCAAGTGGAAGGTGGAACAACAACAACTACAACACCACCTCAGAATCAACCTCAACATCATCAACAACAGCAGCAACAGCAGCAGCAACATTGTTTTCATTCATCAGAGAATGGTGTAGGGAATTTAGGTGGTTCAAGAGGAGAAGGTTTAAGGATGTTGAAAATTGGTAGCGGAGATGTTGAAGAGGAAGACGAAGAAGATGAAGACGACGAGTCAGAAGACTATTCTGATGAGGATGAAGAAGAATCAGGAGAAGGTGGTTCAAAGGGTCATCAACTAATTAGTCATTTAAATGATCAAGATGACGACGAAAACGATGGAAAATCAACAAGAAAAAGGCCAAGAAAAGGAGGATTTTCATTTTCTATTTCACCATCATCAACATCATTAACATTGATGCATCAAATGAACAATGAAATAAGTGGTGTGTTTCAAGATGGAGGTAAGAGTCCATGGGAGAAAAAGCAATGGATAAGAACCAGGATATTGCAATTGGAAGAACAGAAAGTAAGATATGAATCACAAGCTTTTGAGCTTGAAAAACAAAGGTTGAAATGGCAAAGGTATAGTAGCAAGAAAGAGAGGGAAATGGAGAGAGCTAAACTTGAGAATGAAAGGAGAAGATTAGAAAATGAGAGAATGGTTTTGCTTATTAGGAAGAAGGAGATTGAATTGATGAATCTTCAACAACAACAACAACAGCAGCAGCAACAACAGCACTCTTCAACCTAG 1533 0.379 MMEANGMFSTITSSGLLGVIDTPLHQQQQQQQQQQQQQQNLPNQQQNPHHLHHSQVVSYAPQEQQLHQSIKHGYPPFSSSKNKIQQQQQQQSSQVSDEDEPNFPAEESSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGNDPSKKKSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLTPKMKDEVRKLLNSKHLFFREMCAYHNSCGHGGAGGGASGSNVHHQVEGGTTTTTTPPQNQPQHHQQQQQQQQQHCFHSSENGVGNLGGSRGEGLRMLKIGSGDVEEEDEEDEDDESEDYSDEDEEESGEGGSKGHQLISHLNDQDDDENDGKSTRKRPRKGGFSFSISPSSTSLTLMHQMNNEISGVFQDGGKSPWEKKQWIRTRILQLEEQKVRYESQAFELEKQRLKWQRYSSKKEREMERAKLENERRRLENERMVLLIRKKEIELMNLQQQQQQQQQQQHSST* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4232 510 MobiDBLite consensus disorder prediction 326 350 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 258 299 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 78 118 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 24 53 - -
Tpr1g4232 510 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 5 509 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 324 393 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 266 299 - -
Tpr1g4232 510 Coils Coil 429 449 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 78 99 - -
Tpr1g4232 510 Pfam Myb/SANT-like DNA-binding domain 121 246 IPR044822 -
Tpr1g4232 510 PANTHER F16F4.11 PROTEIN-RELATED 5 509 - -
Tpr1g4232 510 MobiDBLite consensus disorder prediction 362 380 - -
Tpr1g4232 510 Coils Coil 457 505 - -
Tpr1g4232 510 Gene3D - 124 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4232 Tpr-Chr1 49185185 49187650 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g4232 Myb_DNA-bind_4 6.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4232 - - cam:101509296 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4232 1 49185185 49187650 Tpr1g4232 1 49185185 49187650 ECH
Tpr6g0818 6 7036155 7037861 Tpr1g4232 1 49185185 49187650 PCT