Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4230 ATGGCTTCTTGCGACGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACCACTCTCATCATCTTCACCAAACCTTCGCACCACATCACCACCACCATAACCACCAAACTCACCACCATTTCTCCACCGCTTCAGTCCATTCCAAACCAATCGCCGACGACGACACCGATGAGTACGGAAATCCGTTCGATGATGATGCTGGAAGCGAGAAACGTAAGGATCGAGATGAGATCGGAGACGCAACGACGTCGTACGCGTTTAACAAGAGACCGAAGCCTGTTTCTAGCGGTAGCGGTGGAGTAGGAGCTGTAGGAGCTGAGTATCGGAAGGATCGAGAAGAATGGAGTGATACAGCGATTGTTTGTTTGTTGGAAGCTTATACTGAGAAGTTTGCGCAGCTGAATCGGGGGAATCTGAGAGGAAGAGATTGGGAAGAGGTAGCTTCGGTGGTGAGTGAACGTTGTGAGAATCAATCGAAGAGTGTTGAACAGTGTAAGAACAAGGTTGATAATCTGAAGAAAAGGTATAAGCTGGAGAGGCATAGAATGAACAATGGATGCATCTCTGCTAGTCATTGGCCTTGGTATAAGCAGATGGAACATATCGTTGGAAATTCTCTTCCTTCCAAGTTCGCCGACGACGATAAAGCCATTGTTCCTGCTTCCATTTCACCTAGGCAATCCAAGAGATATGGAGTGGCAACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCACTGCCCAACCTTAGATGGCGGAGAGTTGTTCTGAAAATTAGTGGATCAGCACTTACTGGATCAGATACCTGCAATATTGACCCAAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATCGCTACCCGCCTTGGTGTGGAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGCGGAGATGCATGGGTGACTGCAACAGGTTTAGAAAGATGCACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAACTCATTACTGCTCCAATCAGCTCTGGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAAGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCTGCTCTTCGAGCATCAGAGGTTAATGCTCAGGCTGTCATCAAAGGTACTAATGTAGATGGTGTATACGACTGCAACTCCCGAGAAAACAATTTCACTTTCGAGCACATATCTTTCAGGGAGCTAGTGTCTAGAGGTGACGCCTCTATGGATATGCAAGCCCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCACCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1488 0.4644 MASCDDDDDFSILRDDSHHSHHLHQTFAPHHHHHNHQTHHHFSTASVHSKPIADDDTDEYGNPFDDDAGSEKRKDRDEIGDATTSYAFNKRPKPVSSGSGGVGAVGAEYRKDREEWSDTAIVCLLEAYTEKFAQLNRGNLRGRDWEEVASVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWYKQMEHIVGNSLPSKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALPNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSSEVAIATRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSALEKMGVQTRVQTSVSMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASEVNAQAVIKGTNVDGVYDCNSRENNFTFEHISFRELVSRGDASMDMQALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4230 495 SUPERFAMILY Carbamate kinase-like 255 488 IPR036393 -
Tpr1g4230 495 CDD AAK_UMPK-PyrH-Ec 257 489 IPR015963 GO:0005737|GO:0006221|GO:0033862
Tpr1g4230 495 MobiDBLite consensus disorder prediction 29 43 - -
Tpr1g4230 495 Hamap Uridylate kinase [pyrH]. 254 489 IPR015963 GO:0005737|GO:0006221|GO:0033862
Tpr1g4230 495 Pfam Myb/SANT-like DNA-binding domain 113 203 IPR044822 -
Tpr1g4230 495 Pfam Amino acid kinase family 258 468 IPR001048 -
Tpr1g4230 495 Gene3D - 251 489 IPR036393 -
Tpr1g4230 495 MobiDBLite consensus disorder prediction 63 101 - -
Tpr1g4230 495 Gene3D - 116 179 - -
Tpr1g4230 495 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 66 495 IPR011817 GO:0006221|GO:0009041
Tpr1g4230 495 MobiDBLite consensus disorder prediction 29 49 - -
Tpr1g4230 495 PANTHER URIDYLATE KINASE 66 495 - -
Tpr1g4230 495 Coils Coil 156 183 - -
Tpr1g4230 495 MobiDBLite consensus disorder prediction 65 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4230 Tpr-Chr1 49168234 49172797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4230 94 207 Trihelix Transcription Factor Family AT3G14180 33.898 5.58e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g4230 AA_kinase 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4230 - - gmx:100805176 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4230 1 49168234 49172797 Tpr1g4230 1 49168234 49172797 ECH