Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4228 ATGGCGTGCATGTGGCGCAAGAATGCCTGCAGTGGCAAAAAACTTCCATCAGACGTGCCGCGAGGCCACTTGGCTGTGATAGTAGGAGAGGCAAACAGGAGGTTTGTCATAAGAGCTGACTACCTGAACCACCCATTGCTTCAACAACTGCTTGATCAGGCATATGAAGGACATGGCTTCAACAAGAGTGGTCCTCTGGCTATACCTTGTGATGAGTTCCTATTTGAAGATATTCTTCAGTCCCTTGGTAGAGGAACTCGCACACGTCGATCCTCTTCCCCTGTGCTTACAAAAAAGCTAGATTTGTGCTTTTCCAAAGACTCTGTACCATTACTTGAAGTATTTGACAGAAAAAGGAGCAACAACTACAAGCATTAA 378 0.4577 MACMWRKNACSGKKLPSDVPRGHLAVIVGEANRRFVIRADYLNHPLLQQLLDQAYEGHGFNKSGPLAIPCDEFLFEDILQSLGRGTRTRRSSSPVLTKKLDLCFSKDSVPLLEVFDRKRSNNYKH* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4228 125 PANTHER AUXIN RESPONSIVE SAUR PROTEIN 1 113 - -
Tpr1g4228 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 113 IPR003676 GO:0009733
Tpr1g4228 125 Pfam Auxin responsive protein 10 82 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4228 Tpr-Chr1 49150010 49151113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4228 1 93 Calmodulin-binding Proteins AT4G34750 52.083 1.88e-25 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4228 K14488 - gmx:100777611 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4228 1 49150010 49151113 Tpr1g4228 1 49150010 49151113 ECH