Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4225 ATGGAACAAGAAACTATCCACAACAACAACAACAATGTTTCTTCTACAGAGTCAACTCAACAATTAGTTTCAAACCCATTTCCTCAACTAATGAACATGAACATGAACACAAGTCTTGTCAACACTGTTGTTACTACTACTGGAACAACACCAATGGTTCCTCCAGTAACATCAACAGTACCAACAACAACAACAACAGTAACACCAACAGGAAACAACAGTGGTGGAGGAAGTTTAGATTTGTTTGGTAAAAAGAAAAGAGGTAGACCAAGAAAATATGATGCAGATGGAAACCTAAATCCAAGTTACAAGAAAGAAAAACCACCAACATTAACTGCTCCAACATCACCACCACCAGGATTCACTTTGTCCACAAATGATTTTTCCTCAAAAAAGGGTCGTGGTAAACCAACTGGGTTTGGAAATTACCAAATCCTTTCTTCTTTTGGTGAAGTGTTTGCAAGCACAGCTGCTGTGGATTTTACACCACATGTAGTCACAGTTTATACAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGGAGGAATATGCATTCTTTCTGCCAATGGTGCTATCTCTAAAGTTGCATTACGTCAACTTGGTTCTTCTGGTGGTGACATTTTGACTTATGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATACACGGTTTCTGACAATAGTGGCATGAAAACTCGAGAGGGTGGATTGAGTGTCTCACTAGCTGGTCCTGATGGTCGAGTGATCGGAGGCGCTGTTGCTGGTCTTCTTACAGCTGCTGGCCCCATCCAAATTATAGTGGGGAGCTTCATGACAAATGGACATGGTTACAACAAGACCCTTAAAAGGAAATACCAACGCGAACAAACAGTAGTCTCTCCAACTTCAACTGGCCCAGAAACAATGACAGCAGCAAGACCTATCTCACAAGCTAATACTCATGGTGAAAACTTTATGATACCTATTATGTCTCATCAGTTACAAGATCAAATCCAGAGAGAATGTGCAAGTGTTTCAACTGATCCTGATGCTGCTAATTGGAATGGTTCTGATGAATTTTCAGATCAAAGGACATCCCCTGACATCAATATTTCTTTGGCTGATGAATAG 1134 0.4056 MEQETIHNNNNNVSSTESTQQLVSNPFPQLMNMNMNTSLVNTVVTTTGTTPMVPPVTSTVPTTTTTVTPTGNNSGGGSLDLFGKKKRGRPRKYDADGNLNPSYKKEKPPTLTAPTSPPPGFTLSTNDFSSKKGRGKPTGFGNYQILSSFGEVFASTAAVDFTPHVVTVYTGEDVGGKILSFAQKSPRGGICILSANGAISKVALRQLGSSGGDILTYEGRFEILSLSGSYTVSDNSGMKTREGGLSVSLAGPDGRVIGGAVAGLLTAAGPIQIIVGSFMTNGHGYNKTLKRKYQREQTVVSPTSTGPETMTAARPISQANTHGENFMIPIMSHQLQDQIQRECASVSTDPDAANWNGSDEFSDQRTSPDINISLADE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4225 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 278 IPR005175 -
Tpr1g4225 377 MobiDBLite consensus disorder prediction 50 77 - -
Tpr1g4225 377 MobiDBLite consensus disorder prediction 50 122 - -
Tpr1g4225 377 ProSiteProfiles PPC domain profile profile. 158 306 IPR005175 -
Tpr1g4225 377 MobiDBLite consensus disorder prediction 347 371 - -
Tpr1g4225 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 375 IPR039605 GO:0003680
Tpr1g4225 377 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 9 375 - -
Tpr1g4225 377 CDD DUF296 162 278 IPR005175 -
Tpr1g4225 377 Gene3D - 163 301 - -
Tpr1g4225 377 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g4225 377 MobiDBLite consensus disorder prediction 347 377 - -
Tpr1g4225 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 279 - -
Tpr1g4225 377 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4225 Tpr-Chr1 49112050 49116444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4225 84 322 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 47.967 2.12e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4225 - - gmx:100779227 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4225 1 49112050 49116444 Tpr1g4225 1 49112050 49116444 ECH