Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4213 ATGAACCCAAACCATGAAAAAATCTCTCCCAAATTTTCATCTCCTTTGAGCTCACCTTCCATGGTGGAGGTTGAAGCATCATTATCACCTGTGCCTATGGAGTGTTTGCAATTGAACAACCCGGTTCCTCCATTTCTTTCAAAAACATTTGATTTAGTTGATGACCCTTCTTTGAATCCAATTATATCATGGAATTCTAATGGTGTTAGCTTTGTGGTGTGGGATCCATTGGAGTTTGCTAGAATTGTCTTGCCTAGACATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGTAAAATTGACACCGACAAATGGGAGTTTTTCAATGAAGGTTTCCAGAAAGGGAAGAAGCACTTACTGAAGAACATTCAAAGGCGCCGGTCGTCTCAATCTCAGCAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGGGAAATCTGGAGTTGAGGTCGAGATAGAAAGACTGAGGAAAGAGAGGAGTGTGTTAATGCAAGAAGTGGTTGATTTACAGCAACAACAACGAATGACGGCTTCTCATGCAGGTAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTAGCCAAGTTGTTTTCAAATCCGGACTTTTTAGCGCGACTTAAGCAGAAGAAAGAACAAAAAGATATAGAATCTCCAAGAGTGAGAAGGAAGTTTGTTAAGCAAAACCAAAATGAAGAAGAGAATCTTAAAGATGGGAAAATTGTGAGGTACCAACCCAATTGGGAGAACATAAACATGTCTTGTGAAACTCAAGAACTAAGTCATGTTTCCGTTGAACACTCTCCTCACTATTTTTCACATGATTTAGCTAAAGATATAGGTGTTGAAGATTTTACTTCTCAAATTGAGAATATTTCATTAGATAAATATGCTGCAATGCATGAAAATATTTCATCTAATTCAGAAACCATTATTGGTGAAGGATCATCTAGCTTTGGTTTTGATGAACCTTTTTCCAAAGGGAAAAATGTTATTAGTCCAAATGAAGTAGTTATTCCTGAGAATTTTAAAGGGTTTCAAGAGTTTCAATCTATTGGGACTGAAAACATTATCAAACAAGAAGATATATGGGATCCTAATTTCAATATTGGTGTTACTACTACTTCAAGCTGTGGGAATGAAATGTGGGGAAATCCTATCAATTATGGAGTGCCAGATTTTGGAGTTATGTCTGAGACAGATATGTGGGATATTGGTTTTGGAAGTTTAGGTATTGATAAGTGGCCAGCTGATGAATCTCCTTTTGATGAGATAGATAGTCAAGGTGGTAAGCCAAAATATGATTAG 1356 0.3695 MNPNHEKISPKFSSPLSSPSMVEVEASLSPVPMECLQLNNPVPPFLSKTFDLVDDPSLNPIISWNSNGVSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQSQQVGNYVGSSSDAGKSGVEVEIERLRKERSVLMQEVVDLQQQQRMTASHAGNVNQRLQSAEQRQKQMVSFLAKLFSNPDFLARLKQKKEQKDIESPRVRRKFVKQNQNEEENLKDGKIVRYQPNWENINMSCETQELSHVSVEHSPHYFSHDLAKDIGVEDFTSQIENISLDKYAAMHENISSNSETIIGEGSSSFGFDEPFSKGKNVISPNEVVIPENFKGFQEFQSIGTENIIKQEDIWDPNFNIGVTTTSSCGNEMWGNPINYGVPDFGVMSETDMWDIGFGSLGIDKWPADESPFDEIDSQGGKPKYD* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4213 451 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 27 447 - -
Tpr1g4213 451 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g4213 451 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g4213 451 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g4213 451 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g4213 451 Gene3D - 37 135 IPR036388 -
Tpr1g4213 451 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 447 IPR027725 -
Tpr1g4213 451 Coils Coil 154 181 - -
Tpr1g4213 451 SUPERFAMILY "Winged helix" DNA-binding domain 40 134 IPR036390 -
Tpr1g4213 451 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g4213 451 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4213 Tpr-Chr1 48908107 48911079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4213 30 416 HSF AT5G03720 45.316 7.42e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr1g4213 HSF_DNA-bind 7.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4213 K09419 - gmx:100807323 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4213 1 48908107 48911079 Tpr1g4213 1 48908107 48911079 ECH