Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4208 ATGGAGGACCACCATAACAATCATGGTCATCACCACCAACATCACCATCATCATCATCATCAACAATCATCATATGGAAGCATGACAACTGATCTAAGACAACTAGTAAACGGAACAAGATCAACCCATTTTCCATCAATACCGGCTACCGCGGAGGATTTTTTCCCCGGTCACCGGAATCTAACTGCTTTGTTAACTAATTCTCAACAAACACATCATCAAAACGAACAACAGCAACAATATGAGATGATGATGTTGAGTCGTGGTGTAGTACTTGAAGATTTCAATAACATCACCACGACTGCTCAACATCATCATGTTATACCACCACCGACGACGACAACAACAACTGCTAGTGCTAGTGTTTCAACACCGGAGACCATAGGATGTATTGGTGGAGATGCATCCACCGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCTTTATGGGATGAAGTCTCTAGGATAATGTGTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAGTGCAGGGAGAAATTTGAGAACTTATACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGACATGATGGGAAACATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAGCTTCAACAATTTCCAAAACCCCTCAAAAAATACAAATCAAGACAATAATAGTCTCAGTCTCACTAACTCAACTGACTTTGACACTTCATCTTCTGATGATGAGAATGATGAGAAGGGAAAGAGGAAAAGTAGTGGAAGGAGAAGTTGGAAGGTTAAGATAAAAGAGTTTATTGATTCACAAATGAAGAAGCTTGTTGAGAAACAAGAAGATTGGTTGAGTAAGCTTGTGAAGACACTTGAGGAGAAGGAAAATGAGAGGGTTTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGTGAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGAGGAAGGGAAATGAAGGTTGAAAATGAAGCTCATGATCATCATAAGGATATAAATGTAATAAATGAAGCTGAGATTCATCAAAATAACTTTGAGAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTAATGTGAGAGGAGATTCTTCAAAAGAAGGAAACAAGAAGAGAAAGGAGAATTTTTACTTCAACAATAATGAACAATGTTCTATGTATAATCAAGGAAGTAGTTATTGTGATGATCAAAGAGAGGAGATTGTGAAGCTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGTTATCCTTTCTTGCTTAATGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAAATCAATAAATCAAACCAAAACCTTTGA 1533 0.3738 MEDHHNNHGHHHQHHHHHHHQQSSYGSMTTDLRQLVNGTRSTHFPSIPATAEDFFPGHRNLTALLTNSQQTHHQNEQQQQYEMMMLSRGVVLEDFNNITTTAQHHHVIPPPTTTTTTASASVSTPETIGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVSFNNFQNPSKNTNQDNNSLSLTNSTDFDTSSSDDENDEKGKRKSSGRRSWKVKIKEFIDSQMKKLVEKQEDWLSKLVKTLEEKENERVLREEEWRKQEVKRVEKEQKFWSKERAWIEARDAALMEALKNIGGREMKVENEAHDHHKDINVINEAEIHQNNFENQNEDGSEILNSNVRGDSSKEGNKKRKENFYFNNNEQCSMYNQGSSYCDDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCYPFLLNEGGNLWENFGLKINKSNQNL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4208 510 Pfam Myb/SANT-like DNA-binding domain 139 225 IPR044822 -
Tpr1g4208 510 MobiDBLite consensus disorder prediction 1 28 - -
Tpr1g4208 510 MobiDBLite consensus disorder prediction 251 287 - -
Tpr1g4208 510 MobiDBLite consensus disorder prediction 8 22 - -
Tpr1g4208 510 MobiDBLite consensus disorder prediction 251 270 - -
Tpr1g4208 510 MobiDBLite consensus disorder prediction 404 429 - -
Tpr1g4208 510 MobiDBLite consensus disorder prediction 404 420 - -
Tpr1g4208 510 Gene3D - 140 202 - -
Tpr1g4208 510 ProSiteProfiles Myb-like domain profile. 132 197 IPR001005 -
Tpr1g4208 510 Coils Coil 307 334 - -
Tpr1g4208 510 PANTHER - 41 422 - -
Tpr1g4208 510 PANTHER - 421 501 - -
Tpr1g4208 510 CDD GT1 139 204 - -
Tpr1g4208 510 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 421 501 - -
Tpr1g4208 510 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 41 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4208 Tpr-Chr1 48856205 48860650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4208 423 505 Trihelix Transcription Factor Family AT5G03680 34.000 3.69e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g4208 Myb_DNA-bind_4 6.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4208 - - mtr:MTR_1g060990 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4208 1 48856205 48860650 Tpr1g4208 1 48856205 48860650 ECH
Tpr6g0772 6 6513376 6516439 Tpr1g4208 1 48856205 48860650 PCT