Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4205 ATGAATAAAAGAAGAGCTGGAAGGAAGAAATTCCATGAGACTCGACATCCAATTTACAAAGGAGTGAGACAGAGAAATGGAAAATGGGTGTGTGAGATACGACAACCTAGCAACAAAACTCGTGTTTGGCTTGGAACATTTTCTCACCCCGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTAGCTTTCAAAGGTGAAGATGCTTCCTTAAATTTCCCTCATTCAGCTTCCTCATTGCCGCGTCTTAATTCACGAACATCTTCTATTAGGTCTATTCAGTTTGCCGCGACAAAAGCTGCTGAAAAACATTTTTCTTCATGTCAAGATTCAGAACCATTCTTTGCAGAGATTACAAAGAATGATTCTGAATCCTCCTTGGAGAAGTCTTTTTCTAAAAGCTTTTTCTGGGATGAGGAGGAGGTTTTCAACATGCCGGGTTTGATAAATAGCATGGCAGAAGGGTTGTTAATTACACCACCGGCATTGCAGAGAGGTTTTAATTGGGTTGATGGGGATACTACCATGGACTTGTCTCTATGGGAAAATTAA 552 0.4058 MNKRRAGRKKFHETRHPIYKGVRQRNGKWVCEIRQPSNKTRVWLGTFSHPDMAAIAYDVAALAFKGEDASLNFPHSASSLPRLNSRTSSIRSIQFAATKAAEKHFSSCQDSEPFFAEITKNDSESSLEKSFSKSFFWDEEEVFNMPGLINSMAEGLLITPPALQRGFNWVDGDTTMDLSLWEN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4205 183 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Tpr1g4205 183 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Tpr1g4205 183 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Tpr1g4205 183 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 182 - -
Tpr1g4205 183 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tpr1g4205 183 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Tpr1g4205 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 182 - -
Tpr1g4205 183 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Tpr1g4205 183 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Tpr1g4205 183 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4205 Tpr-Chr1 48831223 48831899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4205 3 181 AP2-EREBP Transcription Factor Family AT4G25470 47.027 1.20e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g4205 AP2 2.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4205 - - gmx:100778541 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4205 1 48831223 48831899 Tpr1g4205 1 48831223 48831899 ECH
Tpr6g0771 6 6487363 6488903 Tpr1g4205 1 48831223 48831899 PCT