LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g4201	ATGGGATCATTCTCGGGCACTTGTGAAATTGTTGAAGCAAGGGAAGACATAAATACAGTGAAAGATGCAGGGATATATCAGTCCAGTTCTGGATATAGTGTGTCTGAGAAAAATCAGAAGCTTCCTGCTCTGAAACTGGGATACAAGGATAATCTAGATAATGATATTAATAAGCTGTTTGAATCAATTACTCTCAAGTCTTCATCAAGGGATTTGAGCTTTCTACCAGATGGAACAAGTCCTAATATGAGAAGTGCATTAAAAAAGCCAATGACAGTGCCTCGATCCCCACGAGTTGGGATTTCTGAGCCGGTGACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCGGAAATGGCTGCTATGAAAAGGTTATCAAAGTCAGCAGCTTCTCCGAGAATATCAGAGGCCGGGAAGATACAAACATTGTACAATTCAGTTGTCACTGATGCTAGAAGATCCGGGCCTTCTAATGTTGAGAGTAAAGGGAGTTCAACTGAAATATCTCTGGTGCTAGAAGAAGACAAGTCACTTGTCTTGAATAAAGAATCTCCGCCTCATCAAACTTCCAAAAGCACACCATTGAGCCAAAATGCCCATTCTTCCAAAAACGCAGTTGCAACTACACAAAATGATTCAGGGGCTTCATTGATGCAAAGTGATTCGGAATGTTCGACAAGTAAAGCCGGGGTTTCAGCCCAACCATCAGAACCTACTCAAATAGAAAATCAAATGTCTGCTTCCTCTTCATCTTGTTGTAACACCGATGGAAGTAAAGTAGAGTTGCCTGAAAAAGATTCTTCACCTAAAAAGTTAGGAAATAAAGCATCTATGTCGAAGAATGTGCGGAAAGGTATGGTACAAACAATATCTTCCTCTTCAGTGAATGGCAATAGAGTGTGCAAACTTTCGCGCAATAGCCCCCGAACAGTAAAATCCGTCATAAAAACCAAGAGTTTGGGTAAGAAGAAACTAAAGCAGGGCTCTGATTCTGCTTTACATGTTCCTCCATCCAATGAGGAAAATAACAACCCAGTTCTCACTGCAACTCCACTTGTTTGTGAGAGATGTTGGTGTGAAATCGAAAATACAAATAAAGAAAGCAGCAAAGGTATTATATCATTAGGCACCCCAAGCCCTGCAGATGGAATAAACTTGAAAAGTGTACTCTCTGGGCCAGCATCAAATGGTTGTAATAGAGGCATAGAAGTTGCAAAAGTGAAAAAGAATACCAGATTGAAAGAGCAGCTTGAATTTTCACAAAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGTAGTACAAGTACCAGTGACGAGAGTAATATCAGTGGTTCTAGCTGTGGCAATAGGCCTCACATGTCGAAGGACTTTAGATGGCAAGCTATACGAGATGCTCAAATGCAGCATGGCGTCCTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGTACTGTATATCTTTCTGAACTAATTGGCCAAAATTGTTTGTTTGCTATTAAAGTAATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGGGAAATATTACGAATGCTGGATCATCCTTTTCTTCCAACACTATATGCACAGTTTACATCAGAAAATCTGTCATGTCTGGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGTAGATGTTTTTCAGAGCCAGCAGCAAGGTTTTACGTAGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCAGAAAACATTCTTGTTCGAGAAGACGGTCACATTATGCTCACAGATTTTGACCTTTCACTCAGGTGTGACGTTAGCCCAACACTTCTGAAATCATCTGATATAGATCCAGCCAAGGTTTCTGGTACATGCACAAAGTCAAGCTGCATCGAGCCATTCTGCATTGAACCATCTTGTCAAGTTGCATGTTTCAGTCCTAGATTCTTACCACCTGCTGCAAAAGCAAGGAAACTAAAAGCTGATCTTGCTGCTTATATCAGATCATTGCCGCAGCTTGTGGCAGAGCCCACGGATGCAAGATCAAATTCCTTTGTTGGTACGCATGAATACCTAGCACCTGAGATCATCAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTTTATGAACTTTTATATGGTAGAACACCCTTCAAAGGTTCTAACAATGAAGAAACATTAGCCAACGTCGTCTTGCAAAATCTCCGATTCCCTGATAGCCCGTTTGTTAGTTTCCAAGCAAGGGATCTTATTAAAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTAGGTACAGAGAAAGGCGCTGCAGAGATTAAACAACATCCCTTCTTTGAGGGCCTTAATTGGGCATTAATACGTTGTGCTATCCCACCAGAACTTCCTGACCTTTGTGAATTTGAATTGGGACTTTCAGACATGATTGCACAGTCACAAAGCAAGGATGGCAAATTTTTAGAGTGTACAACAACAGGAGAACAAGTGGAATTTGAGTTGTTTTAG	2601	0.4118	MGSFSGTCEIVEAREDINTVKDAGIYQSSSGYSVSEKNQKLPALKLGYKDNLDNDINKLFESITLKSSSRDLSFLPDGTSPNMRSALKKPMTVPRSPRVGISEPVTLKQALRDLCISKASEMAAMKRLSKSAASPRISEAGKIQTLYNSVVTDARRSGPSNVESKGSSTEISLVLEEDKSLVLNKESPPHQTSKSTPLSQNAHSSKNAVATTQNDSGASLMQSDSECSTSKAGVSAQPSEPTQIENQMSASSSSCCNTDGSKVELPEKDSSPKKLGNKASMSKNVRKGMVQTISSSSVNGNRVCKLSRNSPRTVKSVIKTKSLGKKKLKQGSDSALHVPPSNEENNNPVLTATPLVCERCWCEIENTNKESSKGIISLGTPSPADGINLKSVLSGPASNGCNRGIEVAKVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNISGSSCGNRPHMSKDFRWQAIRDAQMQHGVLGLRHFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSDIDPAKVSGTCTKSSCIEPFCIEPSCQVACFSPRFLPPAAKARKLKADLAAYIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFELGLSDMIAQSQSKDGKFLECTTTGEQVEFELF*	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g4201	866	MobiDBLite	consensus disorder prediction	185	260	-	-
	Tpr1g4201	866	MobiDBLite	consensus disorder prediction	419	451	-	-
	Tpr1g4201	866	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	1	866	-	-
	Tpr1g4201	866	MobiDBLite	consensus disorder prediction	182	285	-	-
	Tpr1g4201	866	MobiDBLite	consensus disorder prediction	322	341	-	-
	Tpr1g4201	866	Pfam	Protein kinase domain	708	811	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g4201	866	Pfam	Protein kinase domain	481	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g4201	866	SMART	serkin_6	480	811	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g4201	866	ProSiteProfiles	Protein kinase domain profile.	480	811	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g4201	866	SUPERFAMILY	Protein kinase-like (PK-like)	456	827	IPR011009	-
	Tpr1g4201	866	Gene3D	Phosphorylase Kinase; domain 1	478	559	-	-
	Tpr1g4201	866	Gene3D	Transferase(Phosphotransferase) domain 1	560	628	-	-
	Tpr1g4201	866	PANTHER	FLIPPASE KINASE 1-RELATED	1	866	-	-
	Tpr1g4201	866	CDD	STKc_phototropin_like	478	830	-	-
	Tpr1g4201	866	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	601	613	IPR008271	GO:0004672\|GO:0006468
	Tpr1g4201	866	Gene3D	Transferase(Phosphotransferase) domain 1	704	826	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g4201	Tpr-Chr1	48744775	48750133	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g4201	1	866	AGC Kinase Gene Family	AT3G52890	53.083	0.0	857

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Tpr1g4201		Pkinase	2.5e-35	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g4201	-		K08286	gmx:100813470	1303.89