Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4198 ATGAAGGTTGTTGCTGCCTATTTGCTTGCCGTTCTTGGAGGCAACGACACCCCCTCCGCCAAAACCATCAAGGACATCCTTGGTTCAGTTGGAGCAGAAGCAGAAGATGATAGAATTGAATTGTTTTTGTCTGAAATTAAGGGCAAAGATTTAGCTGAGGTTATTGCATCTGGTAGGGAAAAGTTGGCATCAGTGCCTTCTGGTGGTGGTGTTGCTGTTGCCGCTGCACCTGCAAGTGGTGGTGGTGCTGCTCCTGCAGCTGCCGAGGCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAATCTGATGATGATATGGGTTTCAGTCTTTTTGATTAA 339 0.4749 MKVVAAYLLAVLGGNDTPSAKTIKDILGSVGAEAEDDRIELFLSEIKGKDLAEVIASGREKLASVPSGGGVAVAAAPASGGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4198 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tpr1g4198 112 Gene3D - 1 59 IPR038716 -
Tpr1g4198 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tpr1g4198 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tpr1g4198 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 112 - -
Tpr1g4198 112 Pfam 60s Acidic ribosomal protein 18 111 - -
Tpr1g4198 112 MobiDBLite consensus disorder prediction 79 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4198 Tpr-Chr1 48650928 48652737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4198 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 71.429 6.83e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4198 K02943 - aof:109825870 125.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4198 1 48650928 48652737 Tpr1g4198 1 48650928 48652737 ECH