Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4192 ATGGAGTGGAATGGTAACCAAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAATCAAACCCCGTATCAAGGAATGGTGGAAGTGAAACAACAAGAGTGGACAGAGACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGGAACCAGGAAAAGAAAAAGAGATTAACTAATGAACAGATGGAATCACTGGAGAGTAGTTTCCAGGAGGAGATAAAGTTAGATCCTCAAAGGAAGATGAAGCTTTCCAAAGAGTTAGGGCTACAGCCTCGACAAATCGCTGTTTGGTTTCAGAACAGGCGTGCAAGGTGGAAGACCAAGCAACTTGAACACCTTTATGATTCACTTAAACACCAATTTAATGTTGTGTCCAAAGAAAAACAGCAGCTTCAGGATGAGGTAATGAAGTTGAAGGCTATGTTGAAAGAGCAAGGTTGTTCTTCTAGTAGAATGCAATGTTACTATTCAGAAATGTCAGGGGAAGAAACAGAAACAGTGGAAAGCACATCAGAGGCTGCTCTGCTTTGCTCCAACAGGGAGGTTAAGGGAAAAGATCATAATCAGTTCAACATTGCAGAGGGAAACTGTTTTAATTTGGAGGATTATAACTTTAACAACAGTGTTCCACTTTTACCCTACTGGCCTAATGTTCCTCATCATAACTATCAACCATAA 696 0.4023 MEWNGNQRSFVPQPESSLSFLYNYNQTPYQGMVEVKQQEWTETMFPEMEKMMKYGNQEKKKRLTNEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDSLKHQFNVVSKEKQQLQDEVMKLKAMLKEQGCSSSRMQCYYSEMSGEETETVESTSEAALLCSNREVKGKDHNQFNIAEGNCFNLEDYNFNNSVPLLPYWPNVPHHNYQP* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4192 231 SMART HOX_1 57 118 IPR001356 GO:0003677
Tpr1g4192 231 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Tpr1g4192 231 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Tpr1g4192 231 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 223 IPR045224 GO:0003700
Tpr1g4192 231 Gene3D - 50 123 - -
Tpr1g4192 231 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Tpr1g4192 231 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Tpr1g4192 231 CDD homeodomain 59 115 IPR001356 GO:0003677
Tpr1g4192 231 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Tpr1g4192 231 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 223 - -
Tpr1g4192 231 Coils Coil 120 147 - -
Tpr1g4192 231 Pfam Homeobox associated leucine zipper 114 148 IPR003106 GO:0006355|GO:0043565
Tpr1g4192 231 SUPERFAMILY Homeodomain-like 48 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4192 Tpr-Chr1 48545555 48547749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4192 1 144 Homeobox Transcription Factor Family AT5G03790 52.469 1.80e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr1g4192 Homeodomain 7.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4192 - - gmx:100778007 281.182