Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4190 ATGATGGAAGCCAATGGAATGTTTTCTACCATCACTTCTTCTGGTTTGCTTGGTGTTATTGATACCCCTTTACACCAACAACAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAACAACAACAGAATCTTCCTAATCAGCAACAAAATCCTCATCATTTGCACCATTCCCAAGTTGTTTCTTATGCTCCCCAAGAACAACAATTACATCAGTCAATAAAACATGGGTACCCTCCATTTTCTTCATCCAAGAACAAAATTCAGCAGCAACAGCAACAGCAAAGCTCTCAGGTGAGTGATGAAGATGAGCCAAATTTTCCAGCTGAAGAAAGTTCTGGTGATCCAAAGCGAAAGATTTCACCTTGGCAAAGAATGAAATGGACTGATACAATGGTAAGGCTATTGATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTTCTGAAGGGAATGATCCAAGTAAGAAAAAGTCTAGTGGTTTGTTACAGAAGAAAGGAAAATGGAAATCTGTTTCAAGGGCTATGATGGAAAAAGGGTTTTATGTGTCACCTCAACAATGTGAAGATAAGTTTAATGATTTGAATAAAAGGTATAAGAGAGTTAATGATATACTTGGAAAAGGAACAGCTTGTAGAGTTGTTGAGAATCAGAATTTGTTGGATACAATGGATTTGACACCAAAGATGAAAGATGAAGTTAGGAAATTGCTTAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGTGGTGCTGGTGGTGGTGCTTCTGGTTCTAATGTTCATCATCAACTGGAAGGTGTAACAACAACAACAACAACACCGCCTCAGAATCAACCTCAACATCATCAACAACAGCAGCAGCAACAACATTGTTTTCATTCATCAGAGAATGGTGTAGGGAATTTAGGTGGTTCAAGAGGAGAAGGTTTAAGGATGTTGAAAATTGGTAGCGGAGATGTTGAAGAGGAAGACGACGAAGATGAAGACGACGAGTCAGAAGACTATTCTGATGAGGATGAAGAAGAATCAGGAGAAGGTGGTTCAAAGGGTCATCAACTAATTAGTCATTTAAATGATCAAGATGACGACGAAAACGATGGAAAATCAACAAGAAAAAGGCCAAGAAAAGGAGGATTTTCATTTTCTATTTCACCATCATCAACATCATTAACATTGATGCATCAAATGAACAATGAAATAAGTGGTGTGTTTCAAGATGGAGGTAAGAGTCCATGGGAGAAAAAGCAATGGATAAGAACCAGGATATTGCAATTGGAAGAACAGAAAGTAAGATATGAATCACAAGCTTTTGAGCTTGAAAAACAAAGGTTGAAATGGCAAAGGTATAGTAGCAAGAAAGAGAGGGAAATGGAGAGAGCTAAACTTGAGAATGAAAGGAGAAGATTAGAAAATGAGAGAATGGTTTTGCTTATTAGGAAGAAGGAGATTGAATTGATGAATCTTCAACAACAACAACAACAGCAGCAGCAACAACAGCACTCTTCAACCTAG 1542 0.3787 MMEANGMFSTITSSGLLGVIDTPLHQQQQQQQQQQQQQQQQQQQNLPNQQQNPHHLHHSQVVSYAPQEQQLHQSIKHGYPPFSSSKNKIQQQQQQQSSQVSDEDEPNFPAEESSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGNDPSKKKSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLTPKMKDEVRKLLNSKHLFFREMCAYHNSCGHGGAGGGASGSNVHHQLEGVTTTTTTPPQNQPQHHQQQQQQQHCFHSSENGVGNLGGSRGEGLRMLKIGSGDVEEEDDEDEDDESEDYSDEDEEESGEGGSKGHQLISHLNDQDDDENDGKSTRKRPRKGGFSFSISPSSTSLTLMHQMNNEISGVFQDGGKSPWEKKQWIRTRILQLEEQKVRYESQAFELEKQRLKWQRYSSKKEREMERAKLENERRRLENERMVLLIRKKEIELMNLQQQQQQQQQQQHSST* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4190 513 MobiDBLite consensus disorder prediction 83 123 - -
Tpr1g4190 513 MobiDBLite consensus disorder prediction 365 383 - -
Tpr1g4190 513 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 6 512 - -
Tpr1g4190 513 MobiDBLite consensus disorder prediction 327 396 - -
Tpr1g4190 513 Coils Coil 460 508 - -
Tpr1g4190 513 MobiDBLite consensus disorder prediction 24 58 - -
Tpr1g4190 513 MobiDBLite consensus disorder prediction 83 104 - -
Tpr1g4190 513 MobiDBLite consensus disorder prediction 277 302 - -
Tpr1g4190 513 Pfam Myb/SANT-like DNA-binding domain 126 251 IPR044822 -
Tpr1g4190 513 Coils Coil 24 45 - -
Tpr1g4190 513 Gene3D - 129 202 - -
Tpr1g4190 513 Coils Coil 432 452 - -
Tpr1g4190 513 MobiDBLite consensus disorder prediction 329 353 - -
Tpr1g4190 513 PANTHER F16F4.11 PROTEIN-RELATED 6 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4190 Tpr-Chr1 48520363 48522398 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g4190 Myb_DNA-bind_4 6.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4190 - - cam:101509296 578.941