Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4188 ATGGCTTCTTGCGACGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACCACTCTCATCATCTTCACCAAACCTTCGCACCACATCACCACCACCATAACCACCAAACTCACCACCATTTCTCCACCGCTTCAGTCCATTCCAAACCAATCGCCGACGACGACACCGATGAGTACGGAAATCCGTTCGATGATGATGCTGGAAGCGAGAAACGTAAGGATCGAGATGAGATCGGAGACGCAACGACGTCGTACGCGTTTAACAAGAGACCGAAGCCTGTTTCTAGCGGTAGCGGTGGAGTAGGAGCTGAGTATCGGAAGGATCGAGAAGAATGGAGTGATACAGCGATTGTTTGTTTGTTGGAAGCTTATACTGAGAAGTTTGCGCAGCTGAATCGGGGGAATCTGAGAGGAAGAGATTGGGAAGAGGTAGCTTCGGTGGTGAGTGAACGTTGTGAGAATCAATCGAAGAGTGTTGAACAGTGTAAGAACAAGGTTGATAATCTGAAGAAAAGGTATAAGCTGGAGAGGCATAGAATGAACAATGGATGCATCTCTACTAGTCATTGGCCTTGGTATAAGCAGATGGAACATATCGTTGGAAATTCTCTTCCTTCCAAGTTCGCCGACGACGATAAAGCCATTGTTCCTGCTTCCATTTCACCTAGGCAATCCAAGAGATATGGAGTGGCAACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCACTGCCCAACCTTAGATGGCGGAGAGTTGTTCTGAAAATTAGTGGATCAGCACTTACTGGATCAGATACCTGCAATATTGACCCAAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATCGCTACCCGCCTTGGTGTGGAGGTAGCAGTTGTTGTTGGAGGTCGTAATTTCTTCTGCGGAGATGCATGGGTGACTGCAACAGGTTTAGAAAGATGCACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAACTCATTACTGCTCCAATCAGCTCTGGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCTGCTCTTCGAGCATCAGAGGTTAATGCTCAGGCTGTCATCAAAGGTACTAATGTAGATGGTGTATACGACTGCAACTCCCGAGAAAACAATTTCACTTTCGAGCACATATCTTTCAGGGAGCTAGTGTCTAGAGGTGACGCCTCTATGGATATGCAAGCCCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCACCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1479 0.4645 MASCDDDDDFSILRDDSHHSHHLHQTFAPHHHHHNHQTHHHFSTASVHSKPIADDDTDEYGNPFDDDAGSEKRKDRDEIGDATTSYAFNKRPKPVSSGSGGVGAEYRKDREEWSDTAIVCLLEAYTEKFAQLNRGNLRGRDWEEVASVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISTSHWPWYKQMEHIVGNSLPSKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALPNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSSEVAIATRLGVEVAVVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSALEKMGVQTRVQTSVSMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASEVNAQAVIKGTNVDGVYDCNSRENNFTFEHISFRELVSRGDASMDMQALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4188 492 SUPERFAMILY Carbamate kinase-like 252 485 IPR036393 -
Tpr1g4188 492 Coils Coil 153 180 - -
Tpr1g4188 492 MobiDBLite consensus disorder prediction 63 103 - -
Tpr1g4188 492 MobiDBLite consensus disorder prediction 29 43 - -
Tpr1g4188 492 Hamap Uridylate kinase [pyrH]. 251 486 IPR015963 GO:0005737|GO:0006221|GO:0033862
Tpr1g4188 492 PANTHER URIDYLATE KINASE 66 492 - -
Tpr1g4188 492 CDD AAK_UMPK-PyrH-Ec 254 486 IPR015963 GO:0005737|GO:0006221|GO:0033862
Tpr1g4188 492 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 66 492 IPR011817 GO:0006221|GO:0009041
Tpr1g4188 492 MobiDBLite consensus disorder prediction 29 49 - -
Tpr1g4188 492 Gene3D - 248 486 IPR036393 -
Tpr1g4188 492 MobiDBLite consensus disorder prediction 65 81 - -
Tpr1g4188 492 Gene3D - 113 176 - -
Tpr1g4188 492 Pfam Myb/SANT-like DNA-binding domain 110 200 IPR044822 -
Tpr1g4188 492 Pfam Amino acid kinase family 255 465 IPR001048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4188 Tpr-Chr1 48501151 48505703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4188 94 204 Trihelix Transcription Factor Family AT3G14180 34.746 2.89e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g4188 AA_kinase 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4188 - - gmx:100805176 771.926