Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4183 ATGGAACAAGAAACTATCCACAACAACAACAACAATGTTTCTTCTACAGAGTCAACTCAACAATTAGTTTCAAACCCATTTCCTCAACTAATGAACATGAACATGAACACAAGTCTTGTCAACACTGTTGTTACTACTACTGGAACAACACCAATGGTTCCTCCAGTAACATCAACAGTACCAACAACAACAACAACAGTAACACCAACAGGAAACAACAGTGGTGGAGGAAGTTTAGATTTGTTTGGTAAAAAGAAAAGAGGTAGACCAAGAAAATATGATGCAGATGGAAACCTAAATCCAAGTTACAAGAAAGAAAAACCACCAACATTAACTGCTCCAACATCACCACCACCAGGATTCACTTTGTCCACAAATGATTTTTCCTCAAAAAAGGGTCGTGGTAAACCAACTGGGTTTGGAAATTACCAAATCCTTTCTTCTTTTGGTGAAGTGTTTGCAAGCACAGCTGCTGTGGATTTTACACCACATGTAGTCACAGTTTATACAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACTGAAGAGTCCAAGAGGAGGAATATGCATTCTTTCTGCCAATGGTGCTATCTCTAAAGTTGCATTACGTCAACTTGGTTCTTCTGGTGGTGACATTTTGACTTATGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATACACGGTTTCTGACAATAGTGGCATGAAAACTCGAGAGGGTGGATTGAGTGTCTCACTAGCTGGTCCTGATGGTCGAGTGATCGGAGGCGCTGTTGCTGGTCTTCTTACAGCTGCTGGCCCCATCCAAATTATAGTGGGGAGTTTCATGACAAATGGACATGGTTACAACAAGACCCTTAAAAGGAAATACCAACGCGAACAAACAGTAGTCTCTCCAACTTCAACTGGCCCAGAAACAATGACAGCAGCAAGACCTATCTCACAAGCTAATACTCGTGGTGAAAACTTTATGATACCTATTATGTCTCATCAGTTACAAGATCAAATCCAGAGAGAATGTGCAAGTGTTTCAACTGATCCTGATGCTGCCAATTGGAATGGTTCTGATGAATTTTCAGATCAAAGGACATCCCCTGACATCAATATTTCTTTGGCTGATGAATAG 1134 0.4065 MEQETIHNNNNNVSSTESTQQLVSNPFPQLMNMNMNTSLVNTVVTTTGTTPMVPPVTSTVPTTTTTVTPTGNNSGGGSLDLFGKKKRGRPRKYDADGNLNPSYKKEKPPTLTAPTSPPPGFTLSTNDFSSKKGRGKPTGFGNYQILSSFGEVFASTAAVDFTPHVVTVYTGEDVGGKILSFALKSPRGGICILSANGAISKVALRQLGSSGGDILTYEGRFEILSLSGSYTVSDNSGMKTREGGLSVSLAGPDGRVIGGAVAGLLTAAGPIQIIVGSFMTNGHGYNKTLKRKYQREQTVVSPTSTGPETMTAARPISQANTRGENFMIPIMSHQLQDQIQRECASVSTDPDAANWNGSDEFSDQRTSPDINISLADE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4183 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 278 IPR005175 -
Tpr1g4183 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 375 IPR039605 GO:0003680
Tpr1g4183 377 Gene3D - 163 301 - -
Tpr1g4183 377 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 9 375 - -
Tpr1g4183 377 MobiDBLite consensus disorder prediction 346 377 - -
Tpr1g4183 377 MobiDBLite consensus disorder prediction 346 371 - -
Tpr1g4183 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 279 - -
Tpr1g4183 377 MobiDBLite consensus disorder prediction 57 77 - -
Tpr1g4183 377 CDD DUF296 162 278 IPR005175 -
Tpr1g4183 377 MobiDBLite consensus disorder prediction 57 119 - -
Tpr1g4183 377 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g4183 377 ProSiteProfiles PPC domain profile profile. 158 306 IPR005175 -
Tpr1g4183 377 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4183 Tpr-Chr1 48442112 48446510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4183 84 319 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 47.737 1.62e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4183 - - gmx:100779227 390.578