LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g4171	ATGAACCCAAACCATGAAAAAATCTCTCCCAAATTTTCATCTCCTTTGAGCTCACCTTCCATGGTGGAGGTTGAAGCATCATTATCACCTGTGCCTATGGAGTGTTTGCAATTGAACAACCCGGTTCCTCCATTTCTTTCAAAAACATTTGATTTAGTTGATGACCCTTCTTTGAATCCAATTATATCATGGAATTCTAATGGTGTTAGCTTTGTGGTGTGGGATCCATTGGAGTTTGCTAGAATTGTCTTGCCTAGACATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGTAAAATCGACACCGACAAATGGGAGTTTTTCAATGAAGGTTTCCAGAAAGGGAAGAAGCACTTACTGAAGAACATTCAAAGGCGCCGGTCGTCTCCATCTCAGCAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGGGAAATCTGGAGTTGAGGTCGAGATAGAAAGACTGAGGAAAGAGAGGAGTGTGTTAATGCAAGAAGTGGTTGATTTACAGCAACAACAACGAATGACGGCTTCTCATGCAGGTAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTAGCCAAGTTGTTTTCAAATCCGGACTTTTTAGCGCGACTTAAGCAGAAGAAAGAACAAAAAGATATAGAATCTCCAAGAGTGAGAAGGAAGTTTGTTAAGCAAAACCAAAATGAAGAAGAGAATCTTAAAGATGGGAAAATTGTGAGGTACCAACCCAATTGGGAGAACATAAACATGTCTTGTGAAACTCAAGAACTAAGTCATGTTTCCGTTGAACACTCTCCTCACTATTTTTCACATGATTTAGCTAAAGATATAGGTGTTGAAGATTTTACTTCTCAAATTGAGAATATTTCATTAGATAAATATGCTGCAATGCATGAAAATATTTCATCTAATTCAGAAACCATTATTGGTGAAGGATCATCTAGCTTTGGTTTTGATGAACCTTTTTCCAAAGGGAAAAATGTTATTAGTCCAAATGAAGTAGTTATTCCTGAGAATTTTAAAGGGTTTCAAGAGTTTCAATCTATTGGGACTGAAAACATTATCAAACAAGAAGATATATGGGATCCTAATTTCAATATTGGTGTTACTACTACTTCAAGCTGTGGGAATGAAATGTGGGGAAATCCTATCAATTATGGAGTGCCAGATTTTGGAGTTATGTCTGAGACAGATATGTGGGATATTGGTTTTGGAAGTTTAGGTATTGATAAGTGGCCAGCTGATGAATCTCCTTTTGATGAGATAGATAGTCAAGGTGGTAAGCCAAAATATGATTAG	1356	0.3709	MNPNHEKISPKFSSPLSSPSMVEVEASLSPVPMECLQLNNPVPPFLSKTFDLVDDPSLNPIISWNSNGVSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSPSQQVGNYVGSSSDAGKSGVEVEIERLRKERSVLMQEVVDLQQQQRMTASHAGNVNQRLQSAEQRQKQMVSFLAKLFSNPDFLARLKQKKEQKDIESPRVRRKFVKQNQNEEENLKDGKIVRYQPNWENINMSCETQELSHVSVEHSPHYFSHDLAKDIGVEDFTSQIENISLDKYAAMHENISSNSETIIGEGSSSFGFDEPFSKGKNVISPNEVVIPENFKGFQEFQSIGTENIIKQEDIWDPNFNIGVTTTSSCGNEMWGNPINYGVPDFGVMSETDMWDIGFGSLGIDKWPADESPFDEIDSQGGKPKYD*	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g4171	451	MobiDBLite	consensus disorder prediction	133	153	-	-
	Tpr1g4171	451	MobiDBLite	consensus disorder prediction	133	151	-	-
	Tpr1g4171	451	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tpr1g4171	451	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tpr1g4171	451	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tpr1g4171	451	PRINTS	Heat shock factor (HSF) domain signature	96	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tpr1g4171	451	Gene3D	-	37	135	IPR036388	-
	Tpr1g4171	451	Coils	Coil	154	181	-	-
	Tpr1g4171	451	SUPERFAMILY	"Winged helix" DNA-binding domain	40	134	IPR036390	-
	Tpr1g4171	451	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-3	27	447	-	-
	Tpr1g4171	451	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tpr1g4171	451	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	27	447	IPR027725	-
	Tpr1g4171	451	SMART	hsfneu3	41	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g4171	Tpr-Chr1	48252315	48255701	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g4171	30	416	HSF	AT5G03720	45.063	1.06e-99	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Tpr1g4171		HSF_DNA-bind	7.2e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g4171	K09419		-	gmx:100807323	547.74