Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4166 ATGGAGGACCACCATAACAATCATGGTCACCACCACCAACATCACCATCGTCATCAACATCATCAACAATCATCATATGGAAGCATGACAACTGATCTAAGACAACTAGTAAACGGAACAAGATCAACCCATTTTCCATCAATACCGTCTACCGCGGAGGATTTTTTCCCCGGTCACCGGAATCTGACTGCTTTGTTAACTAATTCTCAACAGACACATCATCAAAACGAACAACAGCAACAATATGAGATGATGATGTTGAGTCGTGGTGTAGTACTTGAAGATTTCAGTAACATCACCACGACTGCTCAACATCATCATGTTATACCACCACCGACGACGACAACAACAACTGCTAGTGCTAGTGTTTCAACACCGGAGACCATAGGATGTATTGGTGGAGATGCATCCACCGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCTTTATGGGATGAAGTCTCTAGGATAATGTGTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAGTGCAGGGAGAAATTTGAGAACTTATACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGACATGATGGGAAACATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAGCTTCAACAATTTCCAAAACCCCTCAAAAAATACAAATCAAGACAATAATAGTCTCAGTCTCACTAACTCAACTGACTTTGACACTTCATCTTCTGATGATGAGAATGATGAGAAGGGAAAGAGGAAAAGTAGTGGAAGGAGAAGTTGGAAGGTTAAGATAAAAGATTTTATTGATTCACAAATGAAGAAGCTTGTTGAGAAACAAGAAGATTGGTTGAGTAAGCTTGTGAAGACACTTGAGGAGAAGGAAAATGAGAGGGTTTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGTGAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGAGGAAGGGAAATGAAGGTTGAAAATGAAGCTCATGATCATCATAAGGATATAAATGTAATAAATGAAGCTGAGATTCATCAAAATAACTTTGAGAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTAATGTGAGAGGAGATTCTTCAAAAGAAGGAAACAAGAAGAGAAAGGAGAATTTTTACTTCAACAATAATGAACAATGTTCTATGTATAATCAAGGAAGTAGTTATTGTGATGATCAAAGAGAGGAGATTGTGAAGCTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGTTATCCTTTCTTGCTTAATGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAAATCAATAAATCAAACCAAAACCTTTGA 1536 0.3757 MEDHHNNHGHHHQHHHRHQHHQQSSYGSMTTDLRQLVNGTRSTHFPSIPSTAEDFFPGHRNLTALLTNSQQTHHQNEQQQQYEMMMLSRGVVLEDFSNITTTAQHHHVIPPPTTTTTTASASVSTPETIGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVSFNNFQNPSKNTNQDNNSLSLTNSTDFDTSSSDDENDEKGKRKSSGRRSWKVKIKDFIDSQMKKLVEKQEDWLSKLVKTLEEKENERVLREEEWRKQEVKRVEKEQKFWSKERAWIEARDAALMEALKNIGGREMKVENEAHDHHKDINVINEAEIHQNNFENQNEDGSEILNSNVRGDSSKEGNKKRKENFYFNNNEQCSMYNQGSSYCDDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCYPFLLNEGGNLWENFGLKINKSNQNL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4166 511 CDD GT1 140 205 - -
Tpr1g4166 511 MobiDBLite consensus disorder prediction 405 430 - -
Tpr1g4166 511 MobiDBLite consensus disorder prediction 405 421 - -
Tpr1g4166 511 Gene3D - 141 203 - -
Tpr1g4166 511 MobiDBLite consensus disorder prediction 1 28 - -
Tpr1g4166 511 PANTHER - 422 502 - -
Tpr1g4166 511 PANTHER - 42 423 - -
Tpr1g4166 511 MobiDBLite consensus disorder prediction 8 22 - -
Tpr1g4166 511 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 42 423 - -
Tpr1g4166 511 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 422 502 - -
Tpr1g4166 511 Coils Coil 308 335 - -
Tpr1g4166 511 MobiDBLite consensus disorder prediction 252 288 - -
Tpr1g4166 511 Pfam Myb/SANT-like DNA-binding domain 140 226 IPR044822 -
Tpr1g4166 511 MobiDBLite consensus disorder prediction 252 271 - -
Tpr1g4166 511 ProSiteProfiles Myb-like domain profile. 133 198 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4166 Tpr-Chr1 48210003 48214325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4166 424 506 Trihelix Transcription Factor Family AT5G03680 34.000 3.67e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g4166 Myb_DNA-bind_4 6.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4166 - - mtr:MTR_1g060990 716.072