Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4160 ATGGGATCATTCTCGGGTACTTGTGAAATTGTTGAAGCAAGGGAAGACCTAAATACAGCGAAAGATGTAGGGATATATCAGTCCAGTTCTGGATATAGTGTGTCTGAGAAAAATCAGAAGCTTCCTGCGCTGAAACTGGGATACAAGGATAATCTAGATAATGATATTAATAAGCTGTTTGAATCAATTACTCTCAAGTCTTCATCAAGGGATTTGAGCTTTCTACCAGATGGAACAAGTCCTAATATGAGAAGTGCATTAAAAAAGCCAATGACAGTGCCTCGATCCCCACGAGTTGGGATTTCTGAGCCGGTGACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCGGAAATGGCTGCTATGAAAAGGTTATCAAAGTCAGCAGCTTCTCCGAGAATATCAGAGGCCGGGAAGATACAAACATTGTACAATTCAGTTGTCACTGATGCTAGAAGATCCGGGCCTTCTAATGTTGAGAGTAAAGGGAGTTCAACTGAAATATCTCTGGTGCTAGAAGAAGACAAGTCACTTGTCTTGAATAAAGAATCTCCGCCTCATCAAACTTCCAAAAGCACACCATTGAGCCAAAATGCTCATTCTTCCAAAACCGCAGTTGCAACTACACAAAATGATTCAGGGGCTTCATTGATGCAAAGTGATTCGGAATGTTCGACAAGTAAAGCCGGGGCTTCAGCCCAACCATCAGAACCTACTCAAATAGAAAATCAAATGTCTGCTTCCTCTCCATCTTGTTGTAACACCGATGGAAGTAAAGTAGAGTTGCCTGAAAAAGATTCTTCACCTAAAAAGTTAGGAAATAAAGCATCTATGTCGAAGAATGTGCGGAAAGGTATGGTACAAACAATATCTTCCTCTTCAGTGAATGGCAATAGAGTGTGCAAACTTTCGCGCAATAGCCCCCGAACAGTAAAATCCGTCATAAAAACCAAGAGTTTGGGTAAGAAGAAACTAAAGCAGGGCTCTGATGCTGCTTTACATGTTCCTCCATCCAATGAGGAAAATAACAACCCAGTTCTCACTGCAACTCCACTTGTTTGTGAGAGATGTTGGTGTGAAATCGAAAATACAAATAAAGAAAGCAGCAAAGGTATTATATCATTAGGCACCCCAAGCCCTGCAGATGGAATAAACTTGAAAAGTGTACTCTCTGGGCCAGCATCAAATGGTTGTAATAGAGGCATAGAAGTTGCAAAAGTGAAAAAGAATACCAGATTGAAAGAGCAGCTTGAATTTTCACAAAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGTAGTACAAGTACCAGTGACGAGAGTAATATCAGTGGTTCTAGCTGTGGCAATAGGCCTCACATGTCGAAGGACTTTAGATGGCAAGCTATACGAGATGCTCAAATGCAGCATGGCGTCCTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGTACTGTATATCTTTCTGAACTAATTGGCCAAAATTGTTTGTTTGCTATTAAAGTAATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGGGAAATATTACGAATGCTGGATCATCCTTTTCTTCCAACACTATATGCACAGTTTACATCAGAAAATCTGTCATGTCTGGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGTAGATGTTTTTCAGAGCCAGCAGCAAGGTTTTACGTAGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCAGAAAACATTCTTGTTCGAGAAGACGGTCACATTATGCTCACAGATTTTGACCTTTCACTCAGGTGTGACGTTAGCCCAACACTTCTGAAATCATCTGATATAGATCCTGCCAAGGTTTCTGGTACATGCACAAAGTCAAGCTGCATCGAGCCATTCTGCATTGAACCATCTTGTCAAGTTGCATGCTTCAGTCCTAGATTCTTACCACCTGCGGCAAAAGCAAGGAAACTAAAAGCTGATCTTGCTGCTTATATCAGATCATTGCCGCAGCTTGTGGCAGAGCCCACGGATGCAAGATCAAATTCCTTTGTTGGTACGCATGAATACCTAGCACCTGAGATCATCAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTTTATGAACTTTTATATGGTAGAACACCCTTCAAAGGTTCTAACAATGAAGAAACATTAGCCAACGTCGTCTTGCAAAATCTCCGATTCCCTGATAGCCCGTTTGTTAGTTTCCAAGCAAGGGATCTTATTAAAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTAGGTACAGAGAAAGGCGCTGCAGAGATTAAACAACATCCCTTCTTCGAGGGCCTTAATTGGGCATTAATACGTTGTGCTATCCCACCAGAACTTCCTGACCTTTGTGAATTTGAATTGGGACTTTCAGACATGATTGCACAGTCACAAAGCAAGGATGGCAAATTTTTAGAGTGTACAACAACAGGAGAACAAGTGGAATTTGAGTTGTTTTAG 2601 0.4141 MGSFSGTCEIVEAREDLNTAKDVGIYQSSSGYSVSEKNQKLPALKLGYKDNLDNDINKLFESITLKSSSRDLSFLPDGTSPNMRSALKKPMTVPRSPRVGISEPVTLKQALRDLCISKASEMAAMKRLSKSAASPRISEAGKIQTLYNSVVTDARRSGPSNVESKGSSTEISLVLEEDKSLVLNKESPPHQTSKSTPLSQNAHSSKTAVATTQNDSGASLMQSDSECSTSKAGASAQPSEPTQIENQMSASSPSCCNTDGSKVELPEKDSSPKKLGNKASMSKNVRKGMVQTISSSSVNGNRVCKLSRNSPRTVKSVIKTKSLGKKKLKQGSDAALHVPPSNEENNNPVLTATPLVCERCWCEIENTNKESSKGIISLGTPSPADGINLKSVLSGPASNGCNRGIEVAKVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNISGSSCGNRPHMSKDFRWQAIRDAQMQHGVLGLRHFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSDIDPAKVSGTCTKSSCIEPFCIEPSCQVACFSPRFLPPAAKARKLKADLAAYIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFELGLSDMIAQSQSKDGKFLECTTTGEQVEFELF* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4160 866 MobiDBLite consensus disorder prediction 419 451 - -
Tpr1g4160 866 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 866 - -
Tpr1g4160 866 Pfam Protein kinase domain 708 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4160 866 Pfam Protein kinase domain 481 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4160 866 SMART serkin_6 480 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4160 866 ProSiteProfiles Protein kinase domain profile. 480 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4160 866 SUPERFAMILY Protein kinase-like (PK-like) 456 827 IPR011009 -
Tpr1g4160 866 Gene3D Phosphorylase Kinase; domain 1 478 559 - -
Tpr1g4160 866 MobiDBLite consensus disorder prediction 182 284 - -
Tpr1g4160 866 Gene3D Transferase(Phosphotransferase) domain 1 560 628 - -
Tpr1g4160 866 PANTHER FLIPPASE KINASE 1-RELATED 1 866 - -
Tpr1g4160 866 MobiDBLite consensus disorder prediction 185 259 - -
Tpr1g4160 866 CDD STKc_phototropin_like 478 830 - -
Tpr1g4160 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Tpr1g4160 866 Gene3D Transferase(Phosphotransferase) domain 1 704 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4160 Tpr-Chr1 48114707 48119907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4160 1 866 AGC Kinase Gene Family AT3G52890 53.508 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tpr1g4160 Pkinase 2.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4160 - K08286 gmx:100813470 1299.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0759 6 6290571 6295690 Tpr1g4160 1 48114707 48119907 ECH
Tpr1g4160 1 48114707 48119907 Tpr1g4160 1 48114707 48119907 ECH
Tpr6g3450 6 37258093 37260181 Tpr1g4160 1 48114707 48119907 PCT
Tpr6g0759 6 6290571 6295690 Tpr1g4160 1 48114707 48119907 PCT