Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4156 ATGAGAAACAGAAAAAATGTTTCAAACATTCCCATCACCGAAAGGCCTAGACCTCAACCGAAAATTCTCAGCATGGACACTGTAAAGGCCGCTGTCAACGAATTCGTGTCCACATTCATCTTTGTCTTTGCCGCCACAGGCTCTCGAATAGTTGTAAACAAAATCACCGGCGACGCTGTGTTCGGTCTCATTGCCACTGCAATCGCTCAGGCGTTTGCCCTCACTGCTGCGGTTTCTGTCGGAATCAAGTATACGGACATGAATCCGTATACATGTTGTGGGCACCTCAACCCTGCTGTCACGTTTGCCGCTTTTATAGGCGGAAATTTACACATCTTTCGTGCCTTAATCTACTGGATTGCTCAGCTCCTTGCCTCCATCGCCGCCTGCGGGCTGCTCGTGTTCTTTCCCGGTGGACAGTGGGTGCCCGTTTATAGACTTTCAAATGGAGTGGGAGTGGAAAACGCATTGGTGTTAGAGATGGTGATGACATTCATTTTAGTGTTCACGATGTGTGCTACTGTCTTTGATCCCAAGGCCACCAAACGCTATAATGCACCACCACTTAATATTGTGGTTGTGGTCAACGACCAAAATGCACGAAAGCAAGTTCAAATGCCTCCTTTGAACAGGTTTTCACCACTTGCCATTGGGCTCATAGTTGGAGCAAATATTTTAGTTGGCGGGCCTTTTGATGGAGCATCTATGAACCCGGTTCTGTCGTTTGGACCCGCACTCGTCACTTGGAGCTGGAGCAACCATTGGGTCTATTGGGTTGGCCCTTTCATTGGTGGTGGGATTGCTGGTTTTGTTTATGATTTTGCATTTATTACTAAGTAA 840 0.4726 MRNRKNVSNIPITERPRPQPKILSMDTVKAAVNEFVSTFIFVFAATGSRIVVNKITGDAVFGLIATAIAQAFALTAAVSVGIKYTDMNPYTCCGHLNPAVTFAAFIGGNLHIFRALIYWIAQLLASIAACGLLVFFPGGQWVPVYRLSNGVGVENALVLEMVMTFILVFTMCATVFDPKATKRYNAPPLNIVVVVNDQNARKQVQMPPLNRFSPLAIGLIVGANILVGGPFDGASMNPVLSFGPALVTWSWSNHWVYWVGPFIGGGIAGFVYDFAFITK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4156 279 SUPERFAMILY Aquaporin-like 25 277 IPR023271 -
Tpr1g4156 279 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Tpr1g4156 279 PANTHER AQUAPORIN-8 210 278 IPR034294 -
Tpr1g4156 279 PANTHER AQUAPORIN-8 22 196 IPR034294 -
Tpr1g4156 279 Gene3D Glycerol uptake facilitator protein. 18 279 IPR023271 -
Tpr1g4156 279 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 CDD MIP 29 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 Pfam Major intrinsic protein 210 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 Pfam Major intrinsic protein 24 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g4156 279 PANTHER AQUAPORIN TIP1-1 22 196 - -
Tpr1g4156 279 PANTHER AQUAPORIN TIP1-1 210 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4156 Tpr-Chr1 48015636 48017921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4156 19 279 Major Intrinsic Protein MIP AT3G26520 49.242 9.79e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4156 K09873 - gmx:100820403 265.388